RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SLITRK3O94933 977 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 CHRNA1P02708 482 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 TARBP2Q15633 366 aaKnown RBP14.99□□□□□ -0.01
VPS28-202ENST00000377348 FAM173BQ6P4H8 233 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 ANO5Q75V66 913 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 BRAPQ7Z569 592 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 RPAINQ86UA6 219 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 CXXC1Q9P0U4 656 aaPredicted RBP14.99□□□□□ -0.01
VPS28-202ENST00000377348 CEP131Q9UPN4 1083 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 A0A087WWV3 80 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 CAND2O75155 1236 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 CXCL10P02778 98 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 NPEPPSP55786 919 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 MRPS6P82932 125 aaKnown RBP14.98□□□□□ -0.01
VPS28-202ENST00000377348 MGAT3Q09327 533 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 IL17AQ16552 155 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 FAM26DQ5JW98 314 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 RSPH3Q86UC2 560 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 KIAA0319LQ8IZA0 1049 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 LRRC71Q8N4P6 559 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 METTL13Q8N6R0 699 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 ZNF579Q8NAF0 562 aaKnown RBP14.98□□□□□ -0.01
VPS28-202ENST00000377348 CEP89Q96ST8 783 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 PPP1R16BQ96T49 567 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 HSD17B14Q9BPX1 270 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 NIFKQ9BYG3 293 aaKnown RBP14.98□□□□□ -0.01
VPS28-202ENST00000377348 ZSWIM4Q9H7M6 989 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 CDY2AQ9Y6F7 541 aa14.98□□□□□ -0.01
VPS28-202ENST00000377348 ZBBXA8MT70 800 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 MED24O75448 989 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 PFKMP08237 780 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 GHRP10912 638 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 YWHABP31946 246 aaKnown RBP14.97□□□□□ -0.01
VPS28-202ENST00000377348 FXR2P51116 673 aaKnown RBP eCLIP14.97□□□□□ -0.01
VPS28-202ENST00000377348 CLCN3P51790 818 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 ATP2C1P98194 919 aaPredicted RBP14.97□□□□□ -0.01
VPS28-202ENST00000377348 TMEM266Q2M3C6 531 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 RASIP1Q5U651 963 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 FOXD4L5Q5VV16 416 aaPredicted RBP14.97□□□□□ -0.01
VPS28-202ENST00000377348 FAM109BQ6ICB4 259 aaPredicted RBP14.97□□□□□ -0.01
VPS28-202ENST00000377348 EFCAB12Q6NXP0 572 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 C4orf19Q8IY42 314 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 FOXD4L4Q8WXT5 416 aaPredicted RBP14.97□□□□□ -0.01
VPS28-202ENST00000377348 HERVK_113Q902F9 699 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 LRCH3Q96II8 777 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 SUGCTQ9HAC7 445 aa14.97□□□□□ -0.01
VPS28-202ENST00000377348 PP2D1A8MPX8 630 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 MAGEB2O15479 319 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 DKC1O60832 514 aaKnown RBP eCLIP14.96□□□□□ -0.01
VPS28-202ENST00000377348 PARNO95453 639 aaKnown RBP14.96□□□□□ -0.01
VPS28-202ENST00000377348 VTNP04004 478 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 SPATA31C1P0DKV0 1188 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 FXR1P51114 621 aaKnown RBP eCLIP14.96□□□□□ -0.01
VPS28-202ENST00000377348 TBC1D8BQ0IIM8 1120 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 LRIT3Q3SXY7 679 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 CATSPER3Q86XQ3 398 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 LINC01465Q8N7H1 131 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 DBF4BQ8NFT6 615 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 NEK9Q8TD19 979 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 PIGOQ8TEQ8 1089 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 CEP170P1Q96L14 293 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 CYP26B1Q9NR63 512 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 BMP2KQ9NSY1 1161 aaPredicted RBP14.96□□□□□ -0.01
VPS28-202ENST00000377348 GINS2Q9Y248 185 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 TRPV2Q9Y5S1 764 aa14.96□□□□□ -0.01
VPS28-202ENST00000377348 GRXCR1A8MXD5 290 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 LAD1O00515 517 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 CDC25AP30304 524 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 PRPHP41219 470 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 MKRN4PQ13434 485 aaPredicted RBP14.95□□□□□ -0.02
VPS28-202ENST00000377348 DRP2Q13474 957 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 PKP1Q13835 747 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 LPIN1Q14693 890 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 SF3A1Q15459 793 aaKnown RBP14.95□□□□□ -0.02
VPS28-202ENST00000377348 KIZQ2M2Z5 673 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 PLEKHG4Q58EX7 1191 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 XKR9Q5GH70 373 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 IER5Q5VY09 327 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 CNKSR3Q6P9H4 555 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 DTHD1Q6ZMT9 781 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 NME8Q8N427 588 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 IGSF22Q8N9C0 903 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 ZNF668Q96K58 619 aaPredicted RBP14.95□□□□□ -0.02
VPS28-202ENST00000377348 CELF4Q9BZC1 486 aaKnown RBP14.95□□□□□ -0.02
VPS28-202ENST00000377348 CDHR5Q9HBB8 845 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 LRWD1Q9UFC0 647 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 AKT3Q9Y243 479 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 CLIC4Q9Y696 253 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 EVPLQ92817 2033 aa14.95□□□□□ -0.02
VPS28-202ENST00000377348 SIP14410 1827 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 VWA3AA6NCI4 1184 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 M0QZ92 97 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 MAFO75444 373 aaPredicted RBP14.94□□□□□ -0.02
VPS28-202ENST00000377348 LYPLA2O95372 231 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 ACTN1P12814 892 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 CCT6AP40227 531 aaKnown RBP14.94□□□□□ -0.02
VPS28-202ENST00000377348 CEBPZQ03701 1054 aaKnown RBP14.94□□□□□ -0.02
VPS28-202ENST00000377348 ECM1Q16610 540 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 FBXO47Q5MNV8 452 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 POTEGQ6S5H5 508 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms