RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PIH1D3Q9NQM4 214 aaKnown RBP14.71□□□□□ -0.06
COL4A1-201ENST00000375820 PACSIN2Q9UNF0 486 aaPredicted RBP14.71□□□□□ -0.06
COL4A1-201ENST00000375820 SSH2Q76I76 1423 aa14.71□□□□□ -0.06
COL4A1-201ENST00000375820 K7ERI5 159 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 HLA-DPA1P20036 260 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 GUCY2CP25092 1073 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 CLCN6P51797 869 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 TRIML2Q8N7C3 387 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 TDRD7Q8NHU6 1098 aaKnown RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 FSD1LQ9BXM9 530 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 ANAPC7Q9UJX3 599 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 ABCB11O95342 1321 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 ZNF233A6NK53 670 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 GFPT1Q06210 699 aaPredicted RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 CCDC85BQ15834 202 aaPredicted RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 ZC3H18Q86VM9 953 aaKnown RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 NUDCD3Q8IVD9 361 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 EFCAB13Q8IY85 973 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 PCSK1NQ9UHG2 260 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 POTEMA6NI47 508 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 CHEK2O96017 543 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 PDHA1P08559 390 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 LINC00301Q8NCQ3 95 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 NDST4Q9H3R1 872 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 TXLNGQ9NUQ3 528 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 THEGQ9P2T0 379 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 NME3Q13232 169 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 CENPUQ71F23 418 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 ARMC9Q7Z3E5 817 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 AFG1LQ8WV93 481 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 AK8Q96MA6 479 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 CCDC90BQ9GZT6 254 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 KANSL2Q9H9L4 492 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 HPS4Q9NQG7 708 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 ATP8B3O60423 1300 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 TTI1O43156 1089 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 SNX2O60749 519 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 LBRQ14739 615 aaKnown RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 CATSPER4Q7RTX7 472 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 SH3RF3Q8TEJ3 882 aaPredicted RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 OTULINQ96BN8 352 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 PBKQ96KB5 322 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 RAVER2Q9HCJ3 691 aaKnown RBP14.7□□□□□ -0.06
COL4A1-201ENST00000375820 POLR3EQ9NVU0 708 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 FBXL5Q9UKA1 691 aa14.7□□□□□ -0.06
COL4A1-201ENST00000375820 A0A1W2PQ27 194 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 A0A1W2PQ64 194 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 A0A1W2PQD8 194 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 NCK2O43639 380 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 NMT2O60551 498 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 ARL13BQ3SXY8 428 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 C1orf228Q6PIY5 440 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 ZNF467Q7Z7K2 595 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 IFT43Q96FT9 208 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 MAGEF1Q9HAY2 307 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 SYF2O95926 243 aaKnown RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 CDK8P49336 464 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 CUEDC2Q9H467 287 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 DCTN4Q9UJW0 460 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 IQANK1A0A1B0GTG1 560 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 NEMP1O14524 444 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 SPAG7O75391 227 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 KRT31Q15323 416 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 MB21D1Q8N884 522 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 CCDC17Q96LX7 622 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 ADAM33Q9BZ11 813 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 SLC8A2Q9UPR5 921 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 SLFN14P0C7P3 912 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 ATP6V1E1P36543 226 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 GCLMP48507 274 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 ACCSLQ4AC99 568 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 CC2D2BQ6DHV5 1058 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 ZNF746Q6NUN9 644 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 COG4Q9H9E3 785 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 WARS2Q9UGM6 360 aaKnown RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 TRPC5Q9UL62 973 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 MLH3Q9UHC1 1453 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 MOCS2O96007 188 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 CASP8Q14790 479 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 IMPG1Q17R60 797 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 FAM83BQ5T0W9 1011 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 RNF219Q5W0B1 726 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 CRLF3Q8IUI8 442 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 RNF25Q96BH1 459 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.69□□□□□ -0.06
COL4A1-201ENST00000375820 KIAA0232Q92628 1395 aa14.69□□□□□ -0.06
COL4A1-201ENST00000375820 PDCLQ13371 301 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 CCNYL1Q8N7R7 359 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 LBHD1Q9BQE6 289 aaPredicted RBP14.68□□□□□ -0.06
COL4A1-201ENST00000375820 USP17L5A8MUK1 530 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 KPNA2P52292 529 aaKnown RBP14.68□□□□□ -0.06
COL4A1-201ENST00000375820 ARMCX2Q7L311 632 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 FAM213AQ9BRX8 229 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 LEMD3Q9Y2U8 911 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 COPEO14579 308 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 BEND6Q5SZJ8 279 aaPredicted RBP14.68□□□□□ -0.06
COL4A1-201ENST00000375820 PITPNM3Q9BZ71 974 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 DNAJC12Q9UKB3 198 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 PHLPP2Q6ZVD8 1323 aa14.68□□□□□ -0.06
COL4A1-201ENST00000375820 WDR17Q8IZU2 1322 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms