RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CCT6BQ92526 530 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 HES6Q96HZ4 224 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 KDM4CQ9H3R0 1056 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 ANKIB1Q9P2G1 1089 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 INTUQ9ULD6 942 aa23.03■■□□□ 1.28
UPF3A-202ENST00000375299 POTEB3A0JP26 581 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 POTECB2RU33 542 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 GCFC2P16383 781 aaKnown RBP23.02■■□□□ 1.28
UPF3A-202ENST00000375299 NPEPPSP55786 919 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 POU5F1Q01860 360 aaKnown RBP23.02■■□□□ 1.28
UPF3A-202ENST00000375299 IFFO1Q0D2I5 559 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 POTEBQ6S5H4 581 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 VPS36Q86VN1 386 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 TEX11Q8IYF3 940 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 CENPTQ96BT3 561 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 LRRC4CQ9HCJ2 640 aa23.02■■□□□ 1.28
UPF3A-202ENST00000375299 TPX2Q9ULW0 747 aaKnown RBP23.02■■□□□ 1.28
UPF3A-202ENST00000375299 PPFIA2O75334 1257 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 DNAJC8O75937 253 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-202ENST00000375299 KRT18P05783 430 aaKnown RBP23.01■■□□□ 1.27
UPF3A-202ENST00000375299 ELF1P32519 619 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 NF2P35240 595 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 HVCN1Q96D96 273 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 XPO6Q96QU8 1125 aaKnown RBP23.01■■□□□ 1.27
UPF3A-202ENST00000375299 TXLNGYQ9BZA5 131 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 ZHX3Q9H4I2 956 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 TRAF3IP3Q9Y228 551 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 ERMARDQ5T6L9 678 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 ATP8B4Q8TF62 1192 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 ARHGEF1Q92888 912 aaKnown RBP23.01■■□□□ 1.27
UPF3A-202ENST00000375299 CHMP6Q96FZ7 201 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 FMO2Q99518 471 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 FAM129AQ9BZQ8 928 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 DONSONQ9NYP3 566 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 PITPNM2Q9BZ72 1349 aa23.01■■□□□ 1.27
UPF3A-202ENST00000375299 JAM2P57087 298 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 EPHA7Q15375 998 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 TRIM51Q9BSJ1 452 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 RAB17Q9H0T7 212 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 AJAP1Q9UKB5 411 aaPredicted RBP23■■□□□ 1.27
UPF3A-202ENST00000375299 ODF2LQ9ULJ1 636 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 TTC7AQ9ULT0 858 aaPredicted RBP23■■□□□ 1.27
UPF3A-202ENST00000375299 ATP8A1Q9Y2Q0 1164 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 RTCBQ9Y3I0 505 aaKnown RBP23■■□□□ 1.27
UPF3A-202ENST00000375299 F8W031 263 aaPredicted RBP23■■□□□ 1.27
UPF3A-202ENST00000375299 ATP2C2O75185 946 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 XRCC5P13010 732 aaKnown RBP23■■□□□ 1.27
UPF3A-202ENST00000375299 CASP5P51878 434 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 HOOK3Q86VS8 718 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 LRRC47Q8N1G4 583 aaKnown RBP23■■□□□ 1.27
UPF3A-202ENST00000375299 CUL5Q93034 780 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 GPCPD1Q9NPB8 672 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 AMFRQ9UKV5 643 aa23■■□□□ 1.27
UPF3A-202ENST00000375299 PNMA6FA0A0J9YX94 578 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 DDX3XO00571 662 aaKnown RBP eCLIP22.99■■□□□ 1.273e-7■■■■□ 19.9
UPF3A-202ENST00000375299 SLC26A4O43511 780 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 ARSHQ5FYA8 562 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 CEP57Q86XR8 500 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 MDM1Q8TC05 714 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 SIX2Q9NPC8 291 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 SNHG28P0DPA3 235 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 SLC12A3P55017 1021 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 DCAF17Q5H9S7 520 aaPredicted RBP22.99■■□□□ 1.27
UPF3A-202ENST00000375299 U2AF1L4Q8WU68 220 aaKnown RBP22.99■■□□□ 1.27
UPF3A-202ENST00000375299 SCLT1Q96NL6 688 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 JMJD4Q9H9V9 463 aa22.99■■□□□ 1.27
UPF3A-202ENST00000375299 PLIN4Q96Q06 1357 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 GPR75-ASB3A0A0A6YYF3 556 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 PPP1R11O60927 126 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-202ENST00000375299 CAND2O75155 1236 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 FGGP02679 453 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 NFIXQ14938 502 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 KNOP1Q1ED39 458 aaKnown RBP22.98■■□□□ 1.27
UPF3A-202ENST00000375299 NAP1L4Q99733 375 aaKnown RBP22.98■■□□□ 1.27
UPF3A-202ENST00000375299 TRIM31Q9BZY9 425 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 DHX36Q9H2U1 1008 aaKnown RBP22.98■■□□□ 1.27
UPF3A-202ENST00000375299 PNMA2Q9UL42 364 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 KIF1CO43896 1103 aaKnown RBP22.98■■□□□ 1.27
UPF3A-202ENST00000375299 GRAPQ13588 217 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 CCDC197Q8NCU1 140 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 GRAPLQ8TC17 118 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-202ENST00000375299 MTMR4Q9NYA4 1195 aa22.98■■□□□ 1.27
UPF3A-202ENST00000375299 CALUO43852 315 aaPredicted RBP22.97■■□□□ 1.27
UPF3A-202ENST00000375299 CTNND1O60716 968 aaKnown RBP22.97■■□□□ 1.27
UPF3A-202ENST00000375299 MRPL12P52815 198 aaKnown RBP22.97■■□□□ 1.27
UPF3A-202ENST00000375299 GALCP54803 685 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 PTENP60484 403 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 ZNF804AQ7Z570 1209 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 N4BP2L2Q92802 583 aaPredicted RBP22.97■■□□□ 1.27
UPF3A-202ENST00000375299 CCNL1Q9UK58 526 aaPredicted RBP22.97■■□□□ 1.27
UPF3A-202ENST00000375299 BTAF1O14981 1849 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 OPLAHO14841 1288 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 MGRN1O60291 552 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 MED24O75448 989 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 TRIM37O94972 964 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 NUDT17P0C025 328 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 FERP16591 822 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 SLC8A1P32418 973 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 MMP14P50281 582 aa22.97■■□□□ 1.27
UPF3A-202ENST00000375299 ADGRF4Q8IZF3 695 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms