RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 CUL1Q13616 776 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 C1orf131Q8NDD1 294 aaKnown RBP12.11□□□□□ -0.47
CCDC40-203ENST00000374877 SPAG5Q96R06 1193 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 IDI2Q9BXS1 227 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 RASA1P20936 1047 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 ECHS1P30084 290 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 FXR2P51116 673 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC40-203ENST00000374877 TNIP1Q15025 636 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 C6orf89Q6UWU4 347 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 COA7Q96BR5 231 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 LRRC27Q9C0I9 530 aa12.11□□□□□ -0.47
CCDC40-203ENST00000374877 CDK5RAP2Q96SN8 1893 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 COL2A1P02458 1487 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 KRIT1O00522 736 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 DAPK3O43293 454 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 RASSF9O75901 435 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 MYBP10242 640 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 ACTN1P12814 892 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 FLT3P36888 993 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 PTK2Q05397 1052 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 SPRED3Q2MJR0 410 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 KRT71Q3SY84 523 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 CIAPIN1Q6FI81 312 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 MTMR14Q8NCE2 650 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 SCLT1Q96NL6 688 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 BMP2KQ9NSY1 1161 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 AMACRQ9UHK6 382 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 SLC12A6Q9UHW9 1150 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 PGRMC1O00264 195 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 TRAPPC3O43617 180 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 USP11P51784 963 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 PPP2R2AP63151 447 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 PLCB4Q15147 1175 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 ZCWPW2Q504Y3 356 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 C16orf86Q6ZW13 317 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 CACNA2D3Q8IZS8 1091 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 OSBPL7Q9BZF2 842 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 HAUS2Q9NVX0 235 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 TMEM59LQ9UK28 342 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 NOC2LQ9Y3T9 749 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 H0YGN5 161 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 RAD17O75943 681 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 RPS12P25398 132 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 MAGOHP61326 146 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 CXCL9Q07325 125 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 SF3A3Q12874 501 aaKnown RBP eCLIP12.1□□□□□ -0.474e-9■■■■■ 57
CCDC40-203ENST00000374877 BIRC3Q13489 604 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 ECM1Q16610 540 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 ARHGAP27Q6ZUM4 889 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 CPLX4Q7Z7G2 160 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 MAGOHBQ96A72 148 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 SEC16BQ96JE7 1060 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 TRIM31Q9BZY9 425 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 DPH5Q9H2P9 285 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 ACTR5Q9H9F9 607 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 A1CFQ9NQ94 594 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 CNOT8Q9UFF9 292 aaKnown RBP12.1□□□□□ -0.47
CCDC40-203ENST00000374877 GGA2Q9UJY4 613 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 NFS1Q9Y697 457 aa12.1□□□□□ -0.47
CCDC40-203ENST00000374877 FRMPD2Q68DX3 1309 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-203ENST00000374877 DCDC2CA8MYV0 355 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 IFFO1Q0D2I5 559 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 DRP2Q13474 957 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 HERC4Q5GLZ8 1057 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-203ENST00000374877 TRIM59Q8IWR1 403 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 METTL13Q8N6R0 699 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 SCFD2Q8WU76 684 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC40-203ENST00000374877 PBKQ96KB5 322 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 PHF20L1A8MW92 1017 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 DNM1LO00429 736 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 PDHBP11177 359 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 ITGA4P13612 1032 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 ADAM9Q13443 819 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 NEDD9Q14511 834 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 SNCBQ16143 134 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 CYB5D1Q6P9G0 228 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 PEX26Q7Z412 305 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 RAPGEF5Q92565 580 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 DNAJC19Q96DA6 116 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 FHDC1Q9C0D6 1143 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-203ENST00000374877 AIPL1Q9NZN9 384 aa12.09□□□□□ -0.47
CCDC40-203ENST00000374877 NPHP3-ACAD11A0A0J9YXS1 232 aa12.08□□□□□ -0.47
CCDC40-203ENST00000374877 SRRM3A6NNA2 597 aaPredicted RBP12.08□□□□□ -0.47
CCDC40-203ENST00000374877 NF2P35240 595 aa12.08□□□□□ -0.47
CCDC40-203ENST00000374877 ADCY7P51828 1080 aa12.08□□□□□ -0.47
CCDC40-203ENST00000374877 KCNH2Q12809 1159 aa12.08□□□□□ -0.47
CCDC40-203ENST00000374877 IFI16Q16666 785 aaKnown RBP12.08□□□□□ -0.47
CCDC40-203ENST00000374877 ZNF571Q7Z3V5 609 aaPredicted RBP12.08□□□□□ -0.47
CCDC40-203ENST00000374877 CEP63Q96MT8 703 aa12.08□□□□□ -0.47
CCDC40-203ENST00000374877 ADAMTSL1Q8N6G6 1762 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 FAM170AA1A519 330 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 USP17L5A8MUK1 530 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 FZD9O00144 591 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 TTI1O43156 1089 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 ENTPD3O75355 529 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 GNA14O95837 355 aa12.08□□□□□ -0.48
CCDC40-203ENST00000374877 KRT18P05783 430 aaKnown RBP12.08□□□□□ -0.48
CCDC40-203ENST00000374877 DHX9Q08211 1270 aaKnown RBP12.08□□□□□ -0.48
CCDC40-203ENST00000374877 MTMR3Q13615 1198 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms