RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NT5DC3Q86UY8 548 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 RASGEF1CQ8N431 466 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 BCAS3Q9H6U6 928 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 GCNT4Q9P109 453 aa17.86■□□□□ 0.45
SDC4-201ENST00000372733 RTCBQ9Y3I0 505 aaKnown RBP17.86■□□□□ 0.45
SDC4-201ENST00000372733 F8VZ95 297 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 RASSF9O75901 435 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 GSCP56915 257 aaPredicted RBP17.85■□□□□ 0.45
SDC4-201ENST00000372733 DDR1Q08345 913 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 BYSLQ13895 437 aaKnown RBP17.85■□□□□ 0.45
SDC4-201ENST00000372733 PLCB4Q15147 1175 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 CCDC114Q96M63 670 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 REEP2Q9BRK0 252 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 SLITRK6Q9H5Y7 841 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 KCNMB3Q9NPA1 279 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 SUCLA2Q9P2R7 463 aaPredicted RBP17.85■□□□□ 0.45
SDC4-201ENST00000372733 ATF5Q9Y2D1 282 aaPredicted RBP17.85■□□□□ 0.45
SDC4-201ENST00000372733 NR2E1Q9Y466 385 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 IGKV6D-41A0A0C4DH26 115 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 RPS6KA4O75676 772 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 GFPT2O94808 682 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 KNOP1Q1ED39 458 aaKnown RBP17.85■□□□□ 0.45
SDC4-201ENST00000372733 SEC16BQ96JE7 1060 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 TRAF3IP3Q9Y228 551 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 NRAPQ86VF7 1730 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 KIF13BQ9NQT8 1826 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 GOLGA6L7A0A1B0GV03 622 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 DNM1LO00429 736 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 ZBTB5O15062 677 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 RGL2O15211 777 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 TTLL1O95922 423 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 MAP2K2P36507 400 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 JAM2P57087 298 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 GIT2Q14161 759 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 OSGEPQ9NPF4 335 aa17.85■□□□□ 0.45
SDC4-201ENST00000372733 RSPH10B2B2RC85 870 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ATP2C2O75185 946 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 FGGP02679 453 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 RSPH10BP0C881 870 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 COPB2P35606 906 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 GABPAQ06546 454 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ADAT2Q7Z6V5 191 aaKnown RBP17.84■□□□□ 0.45
SDC4-201ENST00000372733 MDM1Q8TC05 714 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ATP8B4Q8TF62 1192 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ZKSCAN4Q969J2 545 aaPredicted RBP17.84■□□□□ 0.45
SDC4-201ENST00000372733 ATP8A1Q9Y2Q0 1164 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 GAKO14976 1311 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 SPATA31A5Q5VU36 1347 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 SPATA31A7Q8IWB4 1347 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 PITPNM2Q9BZ72 1349 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 PHF20L1A8MW92 1017 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ASTN1O14525 1302 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 GALCP54803 685 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 DRP2Q13474 957 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ANKRD20A8PQ5CZ79 823 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 VPS36Q86VN1 386 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 CATSPER3Q86XQ3 398 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 CCDC26Q8TAB7 109 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 LNX1Q8TBB1 728 aaPredicted RBP17.84■□□□□ 0.45
SDC4-201ENST00000372733 SLC35C1Q96A29 364 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 HES6Q96HZ4 224 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 ANO3Q9BYT9 981 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 IGSF9BQ9UPX0 1349 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 DAGLAQ9Y4D2 1042 aa17.84■□□□□ 0.45
SDC4-201ENST00000372733 CLIC2O15247 247 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 BUB1BO60566 1050 aaPredicted RBP17.83■□□□□ 0.44
SDC4-201ENST00000372733 NR3C1P04150 777 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 PAEPP09466 180 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 SLURP2P0DP57 97 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 KCNA1Q09470 495 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 EPM2AIP1Q7L775 607 aaPredicted RBP17.83■□□□□ 0.44
SDC4-201ENST00000372733 CACNA2D3Q8IZS8 1091 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 OLIG1Q8TAK6 271 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 SEC14L1Q92503 715 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 IKZF4Q9H2S9 585 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 HAUS2Q9NVX0 235 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 UTP11Q9Y3A2 253 aaKnown RBP17.83■□□□□ 0.44
SDC4-201ENST00000372733 C5orf60A6NFR6 353 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 IFFO1Q0D2I5 559 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 PRPF4BQ13523 1007 aaKnown RBP17.83■□□□□ 0.44
SDC4-201ENST00000372733 DCAF12L1Q5VU92 463 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 C3orf20Q8ND61 904 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 LMBR1Q8WVP7 490 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 TATDN2Q93075 761 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 PSMD1Q99460 953 aa17.83■□□□□ 0.44
SDC4-201ENST00000372733 ACTR5Q9H9F9 607 aaPredicted RBP17.83■□□□□ 0.44
SDC4-201ENST00000372733 DDX4Q9NQI0 724 aaKnown RBP17.83■□□□□ 0.44
SDC4-201ENST00000372733 A0A0A6YYK5 440 aaPredicted RBP17.82■□□□□ 0.44
SDC4-201ENST00000372733 CHUKO15111 745 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 RAD21O60216 631 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 POU5F1Q01860 360 aaKnown RBP17.82■□□□□ 0.44
SDC4-201ENST00000372733 SPIRE1Q08AE8 756 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 C15orf52Q6ZUT6 534 aaKnown RBP17.82■□□□□ 0.44
SDC4-201ENST00000372733 SYCE1Q8N0S2 351 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 ARHGEF1Q92888 912 aaKnown RBP17.82■□□□□ 0.44
SDC4-201ENST00000372733 FMO2Q99518 471 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 AMFRQ9UKV5 643 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 PCDHB13Q9Y5F0 798 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 CALUO43852 315 aaPredicted RBP17.82■□□□□ 0.44
SDC4-201ENST00000372733 GLYCTKQ8IVS8 523 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms