RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ABCF3Q9NUQ8 709 aa4.4□□□□□ -1.7
MCF2-203ENST00000370576 IRAK4Q9NWZ3 460 aa4.4□□□□□ -1.7
MCF2-203ENST00000370576 RABL2AQ9UBK7 228 aaPredicted RBP4.4□□□□□ -1.7
MCF2-203ENST00000370576 C19orf53Q9UNZ5 99 aaPredicted RBP4.4□□□□□ -1.7
MCF2-203ENST00000370576 IKBKGQ9Y6K9 419 aa4.4□□□□□ -1.7
MCF2-203ENST00000370576 RALGAPA2Q2PPJ7 1873 aa4.4□□□□□ -1.7
MCF2-203ENST00000370576 SMTNL1A8MU46 457 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 GIPC1O14908 333 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 FOXD2O60548 495 aaPredicted RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 CTDNEP1O95476 244 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 SSBP05455 408 aaKnown RBP eCLIP4.4□□□□□ -1.71
MCF2-203ENST00000370576 HNRNPLP14866 589 aaKnown RBP eCLIP4.4□□□□□ -1.71
MCF2-203ENST00000370576 EIF2S2P20042 333 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 LIFRP42702 1097 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 NAA30Q147X3 362 aaPredicted RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 FOXB2Q5VYV0 432 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 TRIM50Q86XT4 487 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 CPA6Q8N4T0 437 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 C7orf31Q8N865 590 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 SPATA18Q8TC71 538 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 MTMR8Q96EF0 704 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 ZSCAN31Q96LW9 406 aaPredicted RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 FUCA2Q9BTY2 467 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 INTS7Q9NVH2 962 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 PPP1R9AQ9ULJ8 1098 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 LACTBL1A8MY62 500 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 PES1O00541 588 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 RASA4O43374 803 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 SNHG28P0DPA3 235 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 HSPD1P10809 573 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 GNAT2P19087 354 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 EIF4BP23588 611 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 ANP32AP39687 249 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 ATP1A2P50993 1020 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 COL9A3Q14050 684 aaPredicted RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 KRT32Q14532 448 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 SMC1AQ14683 1233 aaKnown RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 TEAD4Q15561 434 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 SLC45A4Q5BKX6 768 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 CCDC102BQ68D86 513 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 ATL3Q6DD88 541 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 LBX2Q6XYB7 198 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 LURAP1LQ8IV03 231 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 NEDD1Q8NHV4 660 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 TNFRSF25Q93038 417 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 OSBP2Q969R2 916 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 TEKT1Q969V4 418 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 SLC10A4Q96EP9 437 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 RMDN3Q96TC7 470 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 PLVAPQ9BX97 442 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 LRRC3Q9BY71 257 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 TRIM6Q9C030 488 aaPredicted RBP4.4□□□□□ -1.71
MCF2-203ENST00000370576 EHD4Q9H223 541 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 TRHDEQ9UKU6 1024 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 CEP83Q9Y592 693 aa4.4□□□□□ -1.71
MCF2-203ENST00000370576 RASA4BC9J798 803 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 SLC4A1P02730 911 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 MYL6BP14649 208 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 RHCEP18577 417 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 ADORA1P30542 326 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 RBM5P52756 815 aaKnown RBP eCLIP4.39□□□□□ -1.71
MCF2-203ENST00000370576 USP46P62068 366 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 RHDQ02161 417 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 TXNRD1Q16881 649 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 MFSD4BQ5TF39 518 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 HEATR6Q6AI08 1181 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 PACS1Q6VY07 963 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 RAPH1Q70E73 1250 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 ANKRD18AQ8IVF6 992 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 IGDCC4Q8TDY8 1250 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 RUFY2Q8WXA3 655 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 TTC9Q92623 222 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 NSUN4Q96CB9 384 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 NGLY1Q96IV0 654 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 NT5C1BQ96P26 610 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 EXTL2Q9UBQ6 330 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 ZC3H7BQ9UGR2 993 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 LRFN2Q9ULH4 789 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 ZBTB21Q9ULJ3 1066 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CRYL1Q9Y2S2 319 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 H7C0S8 307 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 INO80B-WBP1J3KQ70 363 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CAPN9O14815 690 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 ENDOD1O94919 500 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CYP21A2P08686 494 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 POU2F2P09086 479 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 IFIT1P09914 478 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 RAG1P15918 1043 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CHRNDQ07001 517 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 G3BP1Q13283 466 aaKnown RBP eCLIP4.39□□□□□ -1.71
MCF2-203ENST00000370576 FNDC3BQ53EP0 1204 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 SETMARQ53H47 684 aaPredicted RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 DGKKQ5KSL6 1271 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 KAZNQ674X7 775 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 LYPD8Q6UX82 237 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 KRT74Q7RTS7 529 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 MAP4K3Q8IVH8 894 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 SYNE4Q8N205 404 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 ZNF619Q8N2I2 560 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 UBR7Q8N806 425 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms