RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 BORCS6Q96GS4 357 aa22.84■■□□□ 1.25
CCDC88B-203ENST00000359902 NACC1Q96RE7 527 aa22.84■■□□□ 1.25
CCDC88B-203ENST00000359902 WDR11Q9BZH6 1224 aa22.84■■□□□ 1.25
CCDC88B-203ENST00000359902 IKZF4Q9H2S9 585 aa22.84■■□□□ 1.25
CCDC88B-203ENST00000359902 KLRC1P26715 233 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 MAP9Q49MG5 647 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 ZC2HC1CQ53FD0 456 aaPredicted RBP22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 B3GNT9Q6UX72 402 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 PARVGQ9HBI0 331 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 PCDHB13Q9Y5F0 798 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 N4BP1O75113 896 aaKnown RBP22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 PTGER2P43116 358 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 PTK2Q05397 1052 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 TCERG1LQ5VWI1 586 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 CCNI2Q6ZMN8 369 aaPredicted RBP22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 FIZ1Q96SL8 496 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 DEFB129Q9H1M3 183 aa22.83■■□□□ 1.25
CCDC88B-203ENST00000359902 SHTN1A0MZ66 631 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 GYS2P54840 703 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 MAP3K10Q02779 954 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 KIAA0753Q2KHM9 967 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 AGBL3Q8NEM8 1001 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 ZBTB9Q96C00 473 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 SPAG5Q96R06 1193 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 PACSIN1Q9BY11 444 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 SIX2Q9NPC8 291 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 ZNRF3Q9ULT6 936 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 RBBP6Q7Z6E9 1792 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 FRMPD4Q14CM0 1322 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 PALMO75781 387 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 ZNF131P52739 623 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 SETQ01105 290 aaPredicted RBP22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 NFIL3Q16649 462 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 GBP6Q6ZN66 633 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 ZNF571Q7Z3V5 609 aaPredicted RBP22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 RBM46Q8TBY0 533 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 AGBL1Q96MI9 1066 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 SMARCAL1Q9NZC9 954 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 TSKSQ9UJT2 592 aa22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 BZW2Q9Y6E2 419 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-203ENST00000359902 IPO5O00410 1097 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 DPEP1P16444 411 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 INPP5BP32019 993 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 ZNF720Q7Z2F6 126 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 ZBED3Q96IU2 234 aaPredicted RBP22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 MXRA8Q9BRK3 442 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 LRRC1Q9BTT6 524 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 TEKT3Q9BXF9 490 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 VIPAS39Q9H9C1 493 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 EHD2Q9NZN4 543 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 SEL1LQ9UBV2 794 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 FBXL5Q9UKA1 691 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 ASNSP08243 561 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 MYBL2P10244 700 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 HSD17B4P51659 736 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 CCDC181Q5TID7 509 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 CCDC70Q6NSX1 233 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 KSR1Q8IVT5 923 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 ADAM21Q9UKJ8 722 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 PCDHGC5Q9Y5F6 944 aa22.81■■□□□ 1.24
CCDC88B-203ENST00000359902 PSMC2P35998 433 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 NBPF9Q3BBW0 867 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 HDAC7Q8WUI4 952 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 VPS33BQ9H267 617 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 KCND2Q9NZV8 630 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 AJAP1Q9UKB5 411 aaPredicted RBP22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 ZNF536O15090 1300 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 GTPBP10A4D1E9 387 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 ICAM1P05362 532 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 ITGB5P18084 799 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 COG2Q14746 738 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 FAM186BQ8IYM0 893 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 RIT2Q99578 217 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 GCNT4Q9P109 453 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 CCPG1Q9ULG6 757 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 ODF2LQ9ULJ1 636 aa22.8■■□□□ 1.24
CCDC88B-203ENST00000359902 WNT10BO00744 389 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 PRKCIP41743 596 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 PAFAH1B1P43034 410 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 JAM2P57087 298 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 C10orf76Q5T2E6 689 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 FAM178BQ8IXR5 827 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 NIM1KQ8IY84 436 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 LXNQ9BS40 222 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 COL20A1Q9P218 1284 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 MATR3P43243 847 aaKnown RBP eCLIP22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 TNNT3P45378 269 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 BANK1Q8NDB2 785 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 MS4A14Q96JA4 679 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 ZNF341Q9BYN7 854 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 ACBD3Q9H3P7 528 aa22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 DMGDHQ9UI17 866 aaKnown RBP22.79■■□□□ 1.24
CCDC88B-203ENST00000359902 UBE4BO95155 1302 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 ERICH4A6NGS2 130 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 BTNL10A8MVZ5 291 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 FTCDO95954 541 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 CXCL9Q07325 125 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 MEI1Q5TIA1 1274 aa22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 GSPT2Q8IYD1 628 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-203ENST00000359902 HINFPQ9BQA5 517 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms