RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SLC35C1Q96A29 364 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 AJAP1Q9UKB5 411 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-201ENST00000343916 ZMYM2Q9UBW7 1377 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 PSME4Q14997 1843 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 ATAD5Q96QE3 1844 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 PALMO75781 387 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 EPB41P11171 864 aaKnown RBP21.22■□□□□ 0.99
COL9A3-201ENST00000343916 PRLRP16471 622 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 TCP1P17987 556 aaKnown RBP21.22■□□□□ 0.99
COL9A3-201ENST00000343916 BAG6P46379 1132 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 NBPF9Q3BBW0 867 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 RBM46Q8TBY0 533 aaKnown RBP21.22■□□□□ 0.99
COL9A3-201ENST00000343916 CCDC102AQ96A19 550 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 MS4A14Q96JA4 679 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 LRRC1Q9BTT6 524 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 SHTN1A0MZ66 631 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 PHACTR2O75167 634 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 EIF3JO75822 258 aaKnown RBP21.22■□□□□ 0.99
COL9A3-201ENST00000343916 FTCDO95954 541 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 RPL13P26373 211 aaKnown RBP21.22■□□□□ 0.99
COL9A3-201ENST00000343916 TRAF1Q13077 416 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 IQCEQ6IPM2 695 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 GJB7Q6PEY0 223 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 IRF2BP2Q7Z5L9 587 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 BANK1Q8NDB2 785 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 PSMD1Q99460 953 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 VPS18Q9P253 973 aa21.22■□□□□ 0.99
COL9A3-201ENST00000343916 PACSIN2Q9UNF0 486 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-201ENST00000343916 DPEP1P16444 411 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 GPS2Q13227 327 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 SF3B2Q13435 895 aaKnown RBP21.21■□□□□ 0.99
COL9A3-201ENST00000343916 EPHA7Q15375 998 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 CCDC181Q5TID7 509 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 ZNF571Q7Z3V5 609 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-201ENST00000343916 RNF10Q8N5U6 811 aaKnown RBP21.21■□□□□ 0.99
COL9A3-201ENST00000343916 PARVGQ9HBI0 331 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 ADAM21Q9UKJ8 722 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 INPP5BP32019 993 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 SLC7A5Q01650 507 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 DGKZQ13574 1117 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 NAB2Q15742 525 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 FIZ1Q96SL8 496 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 PLCB1Q9NQ66 1216 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 GCNT4Q9P109 453 aa21.21■□□□□ 0.99
COL9A3-201ENST00000343916 DMGDHQ9UI17 866 aaKnown RBP21.21■□□□□ 0.99
COL9A3-201ENST00000343916 IPO5O00410 1097 aaKnown RBP21.2■□□□□ 0.98
COL9A3-201ENST00000343916 GAP43P17677 238 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 KCNA3P22001 575 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 TXLNBQ8N3L3 684 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 LXNQ9BS40 222 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 TMEM51Q9NW97 253 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 COL20A1Q9P218 1284 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 ZNF341Q9BYN7 854 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 CCPG1Q9ULG6 757 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 SRCAPQ6ZRS2 3230 aa21.2■□□□□ 0.98
COL9A3-201ENST00000343916 NFIBO00712 420 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 WNT10BO00744 389 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 ITGB5P18084 799 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 MCM3P25205 808 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 CCNI2Q6ZMN8 369 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-201ENST00000343916 FAM160B2Q86V87 743 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 MMGT1Q8N4V1 131 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 METTL14Q9HCE5 456 aaKnown RBP21.19■□□□□ 0.98
COL9A3-201ENST00000343916 SIX2Q9NPC8 291 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 LUC7LQ9NQ29 371 aaKnown RBP21.19■□□□□ 0.98
COL9A3-201ENST00000343916 FEM1BQ9UK73 627 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 FAN1Q9Y2M0 1017 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 RBBP6Q7Z6E9 1792 aaKnown RBP21.19■□□□□ 0.98
COL9A3-201ENST00000343916 SLC16A3O15427 465 aaKnown RBP21.19■□□□□ 0.98
COL9A3-201ENST00000343916 TBC1D12O60347 775 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 MAP9Q49MG5 647 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 MAEAQ7L5Y9 396 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 ZNF572Q7Z3I7 529 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-201ENST00000343916 FAM178BQ8IXR5 827 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 FRMPD4Q14CM0 1322 aa21.19■□□□□ 0.98
COL9A3-201ENST00000343916 EIF3DO15371 548 aaKnown RBP eCLIP21.18■□□□□ 0.98
COL9A3-201ENST00000343916 PLS1Q14651 629 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 GRIPAP1Q4V328 841 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 ODR4Q5SWX8 454 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 GBP6Q6ZN66 633 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 ZNF720Q7Z2F6 126 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 CPXCR1Q8N123 301 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 MSL3Q8N5Y2 521 aaKnown RBP21.18■□□□□ 0.98
COL9A3-201ENST00000343916 IL31RAQ8NI17 732 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 BORCS6Q96GS4 357 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 NACC1Q96RE7 527 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 TEKT3Q9BXF9 490 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 EHMT1Q9H9B1 1298 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 RBM12Q9NTZ6 932 aaKnown RBP21.18■□□□□ 0.98
COL9A3-201ENST00000343916 ZNF536O15090 1300 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 FAM186BQ8IYM0 893 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 SELENOOQ9BVL4 669 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 WDR11Q9BZH6 1224 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 GOLPH3Q9H4A6 298 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 PGAP2Q9UHJ9 254 aa21.18■□□□□ 0.98
COL9A3-201ENST00000343916 ASNSP08243 561 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 PAFAH1B1P43034 410 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 CYP2J2P51589 502 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 CXCL9Q07325 125 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 MXRA8Q9BRK3 442 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms