RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 COL11A1P12107 1806 aaPredicted RBP16.52■□□□□ 0.23
TPM3-208ENST00000341485 SPDYE5A6NIY4 337 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 POLR3GO15318 223 aaPredicted RBP16.52■□□□□ 0.23
TPM3-208ENST00000341485 MSH4O15457 936 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 USO1O60763 962 aaKnown RBP16.52■□□□□ 0.23
TPM3-208ENST00000341485 GNA14O95837 355 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 POTEJP0CG39 1038 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 CASP5P51878 434 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 PABPC4Q13310 644 aaKnown RBP eCLIP16.52■□□□□ 0.232e-26■■■□□ 15.7
TPM3-208ENST00000341485 HGSNATQ68CP4 663 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 CACNA2D4Q7Z3S7 1137 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 REPS2Q8NFH8 660 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 FAM20AQ96MK3 541 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 LSM14BQ9BX40 385 aaKnown RBP16.52■□□□□ 0.23
TPM3-208ENST00000341485 ZHX3Q9H4I2 956 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 CEP72Q9P209 647 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 VAV3Q9UKW4 847 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 L1RE1Q9UN81 338 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 ADAMTS5Q9UNA0 930 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 RLFQ13129 1914 aa16.52■□□□□ 0.23
TPM3-208ENST00000341485 PTPRFP10586 1907 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 SPDYE16A6NNV3 312 aaPredicted RBP16.51■□□□□ 0.23
TPM3-208ENST00000341485 AKR1B10O60218 316 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 KIF20AO95235 890 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 MAPK8IP2Q13387 824 aaPredicted RBP16.51■□□□□ 0.23
TPM3-208ENST00000341485 PLS1Q14651 629 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 TREML2Q5T2D2 321 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 NSMFQ6X4W1 530 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 SYT2Q8N9I0 419 aaPredicted RBP16.51■□□□□ 0.23
TPM3-208ENST00000341485 CYP2W1Q8TAV3 490 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 NLRC4Q9NPP4 1024 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 DNM3Q9UQ16 869 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 CAPN6Q9Y6Q1 641 aa16.51■□□□□ 0.23
TPM3-208ENST00000341485 A0A0G2JLL6 359 aaPredicted RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 PDE2AO00408 941 aaPredicted RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 CXCL11O14625 94 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 ZNF185O15231 689 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 GHRHRQ02643 423 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 CKAP4Q07065 602 aaKnown RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 TMEM132BQ14DG7 1078 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 RNF207Q6ZRF8 634 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 PRRT2Q7Z6L0 340 aaPredicted RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 PROCA1Q8NCQ7 364 aaPredicted RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 OPTNQ96CV9 577 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 REEP2Q9BRK0 252 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 SUGCTQ9HAC7 445 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 RRAGCQ9HB90 399 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 COL20A1Q9P218 1284 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.5■□□□□ 0.23
TPM3-208ENST00000341485 SSU72P8A0A1W2PR75 194 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 TLR2O60603 784 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 TACC1O75410 805 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 MOCS3O95396 460 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 TUBBP07437 444 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 RPS6P62753 249 aaKnown RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 FAM193AP78312 1265 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 APBA1Q02410 837 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 PPIL2Q13356 520 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 ADAM9Q13443 819 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 EDRF1Q3B7T1 1238 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 WDR93Q6P2C0 686 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 PPP4R3CPQ6ZMV5 832 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 HDXQ7Z353 690 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 SFR1Q86XK3 245 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 TRIM58Q8NG06 486 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 SYTL5Q8TDW5 730 aaPredicted RBP16.5■□□□□ 0.23
TPM3-208ENST00000341485 TEX13BQ9BXU2 312 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 RIPK3Q9Y572 518 aa16.5■□□□□ 0.23
TPM3-208ENST00000341485 MYH10P35580 1976 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 H3BQF6 201 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 PJA2O43164 708 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 MAGEA1P43355 309 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 GFPT1Q06210 699 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 CEP55Q53EZ4 464 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 SLC30A10Q6XR72 485 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 EPM2AIP1Q7L775 607 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 CRACR2AQ9BSW2 395 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 GBP3Q9H0R5 595 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 ZCCHC17Q9NP64 241 aaKnown RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 RNF216Q9NWF9 866 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 ZNF214Q9UL59 606 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 STK24Q9Y6E0 443 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 LOC285556D6RIA3 1793 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 IGLV3-22A0A075B6J6 115 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 EML1O00423 815 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 ATP2A1O14983 1001 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 HOXD13P35453 343 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 POLR2FP61218 127 aaKnown RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 IRX3P78415 501 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 SETQ01105 290 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 CYP4A11Q02928 519 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 TKFCQ3LXA3 575 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 SFMBT2Q5VUG0 894 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 SYN2Q92777 582 aaPredicted RBP16.49■□□□□ 0.23
TPM3-208ENST00000341485 RPGRIP1Q96KN7 1286 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 JADE2Q9NQC1 790 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 SALL4Q9UJQ4 1053 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 FAM184BQ9ULE4 1060 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 SNX12Q9UMY4 172 aa16.49■□□□□ 0.23
TPM3-208ENST00000341485 JRKLQ9Y4A0 524 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms