RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 MTMR6Q9Y217 621 aa17.11■□□□□ 0.33
UBE3B-201ENST00000340074 SMIM35A0A1B0GVV1 85 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 DDX11L8A8MPP1 907 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 DKC1O60832 514 aaKnown RBP eCLIP17.1■□□□□ 0.33
UBE3B-201ENST00000340074 SLITRK3O94933 977 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 FGBP02675 491 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 CHRNA1P02708 482 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 PFKMP08237 780 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 TARBP2Q15633 366 aaKnown RBP17.1■□□□□ 0.33
UBE3B-201ENST00000340074 MTERF2Q49AM1 385 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 FAM26DQ5JW98 314 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 ANO5Q75V66 913 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 OTOP2Q7RTS6 562 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 TPH2Q8IWU9 490 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 C4orf19Q8IY42 314 aa17.1■□□□□ 0.33
UBE3B-201ENST00000340074 FTOQ9C0B1 505 aaKnown RBP eCLIP17.1■□□□□ 0.33
UBE3B-201ENST00000340074 LAD1O00515 517 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 TMEM62Q0P6H9 643 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 RESTQ13127 1097 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 TMEM266Q2M3C6 531 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 PLA2G4FQ68DD2 849 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 METTL13Q8N6R0 699 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 NEK9Q8TD19 979 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 HSD17B14Q9BPX1 270 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 OSBPL7Q9BZF2 842 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 ZSWIM4Q9H7M6 989 aa17.09■□□□□ 0.33
UBE3B-201ENST00000340074 ZBTB39O15060 712 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 MAGEB2O15479 319 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 CXCL10P02778 98 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 RPLP2P05387 115 aaKnown RBP17.08■□□□□ 0.32
UBE3B-201ENST00000340074 YWHABP31946 246 aaKnown RBP17.08■□□□□ 0.32
UBE3B-201ENST00000340074 PRPHP41219 470 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 FXR2P51116 673 aaKnown RBP eCLIP17.08■□□□□ 0.32
UBE3B-201ENST00000340074 MRPS6P82932 125 aaKnown RBP17.08■□□□□ 0.32
UBE3B-201ENST00000340074 ATP2C1P98194 919 aaPredicted RBP17.08■□□□□ 0.32
UBE3B-201ENST00000340074 MGAT3Q09327 533 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 IL17AQ16552 155 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 KIAA0319LQ8IZA0 1049 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 HERVK_113Q902F9 699 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 CEP89Q96ST8 783 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 CDY2AQ9Y6F7 541 aa17.08■□□□□ 0.32
UBE3B-201ENST00000340074 NPEPPSP55786 919 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 TBC1D8BQ0IIM8 1120 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 LRIT3Q3SXY7 679 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 IER5Q5VY09 327 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 EFCAB12Q6NXP0 572 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 FAM173BQ6P4H8 233 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 NME8Q8N427 588 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 LRRC71Q8N4P6 559 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 CYP26B1Q9NR63 512 aa17.07■□□□□ 0.32
UBE3B-201ENST00000340074 CXXC1Q9P0U4 656 aaPredicted RBP17.07■□□□□ 0.32
UBE3B-201ENST00000340074 MED24O75448 989 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 SPATA31C1P0DKV0 1188 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 ACTN1P12814 892 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 CLCN3P51790 818 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 TCTN1Q2MV58 587 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 RASIP1Q5U651 963 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 DTHD1Q6ZMT9 781 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 OTUD6AQ7L8S5 288 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 CATSPER3Q86XQ3 398 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 IGSF22Q8N9C0 903 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 ZNF579Q8NAF0 562 aaKnown RBP17.06■□□□□ 0.32
UBE3B-201ENST00000340074 CEP170P1Q96L14 293 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 SUGCTQ9HAC7 445 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 TUFT1Q9NNX1 390 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 LRWD1Q9UFC0 647 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 TRPV2Q9Y5S1 764 aa17.06■□□□□ 0.32
UBE3B-201ENST00000340074 M0QZ92 97 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 SOX1O00570 391 aaPredicted RBP17.05■□□□□ 0.32
UBE3B-201ENST00000340074 LYPLA2O95372 231 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 VTNP04004 478 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 TMOD1P28289 359 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 PDIA5Q14554 519 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 SF3A1Q15459 793 aaKnown RBP17.05■□□□□ 0.32
UBE3B-201ENST00000340074 PLEKHG4Q58EX7 1191 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 CNKSR3Q6P9H4 555 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 LINC01465Q8N7H1 131 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 DBF4BQ8NFT6 615 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 ERMNQ8TAM6 284 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 PPP1R16BQ96T49 567 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 POLR3CQ9BUI4 534 aaPredicted RBP17.05■□□□□ 0.32
UBE3B-201ENST00000340074 CELF4Q9BZC1 486 aaKnown RBP17.05■□□□□ 0.32
UBE3B-201ENST00000340074 RAB34Q9BZG1 259 aa17.05■□□□□ 0.32
UBE3B-201ENST00000340074 MTIF3Q9H2K0 278 aaKnown RBP17.05■□□□□ 0.32
UBE3B-201ENST00000340074 ZSCAN16Q9H4T2 348 aaPredicted RBP17.05■□□□□ 0.32
UBE3B-201ENST00000340074 A0A087WWV3 80 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 PP2D1A8MPX8 630 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 ZBBXA8MT70 800 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 MAFO75444 373 aaPredicted RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 GHRP10912 638 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 RPA1P27694 616 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 FXR1P51114 621 aaKnown RBP eCLIP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 DRP2Q13474 957 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 LPIN1Q14693 890 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 XKR9Q5GH70 373 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 FOXD4L5Q5VV16 416 aaPredicted RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 PIGOQ8TEQ8 1089 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 FOXD4L4Q8WXT5 416 aaPredicted RBP17.04■□□□□ 0.32
UBE3B-201ENST00000340074 MAP7D2Q96T17 732 aa17.04■□□□□ 0.32
UBE3B-201ENST00000340074 CDHR5Q9HBB8 845 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms