RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DAW1Q8N136 415 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 NOC3LQ8WTT2 800 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 P2RX5Q93086 422 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 TRIM47Q96LD4 638 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 SPATA33Q96N06 139 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 FIZ1Q96SL8 496 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 PDLIM7Q9NR12 457 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 CTNND2Q9UQB3 1225 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 NOP56O00567 594 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 EIF3DO15371 548 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 DGAT1O75907 488 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 FAM13AO94988 1023 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 ZNF865P0CJ78 1059 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 STAT5BP51692 787 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 LRRC63Q05C16 580 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 GRM1Q13255 1194 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 TARBP2Q15633 366 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 ZCWPW2Q504Y3 356 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 XKR9Q5GH70 373 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 KLHL10Q6JEL2 608 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 SFR1Q86XK3 245 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 MYOCDQ8IZQ8 938 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 MCPH1Q8NEM0 835 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 DRC1Q96MC2 740 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 CEP89Q96ST8 783 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 ST6GALNAC4Q9H4F1 302 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 C17orf75Q9HAS0 396 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 SLC39A2Q9NP94 309 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 CYP26B1Q9NR63 512 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 FLRT1Q9NZU1 646 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 MCM3APO60318 1980 aa16.53■□□□□ 0.24
CCDC88C-202ENST00000334448 RSPH10B2B2RC85 870 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 RSPH10BP0C881 870 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 ADCYAP1R1P41586 468 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 PSMC4P43686 418 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 VEGFBP49765 207 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 SP4Q02446 784 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 SP3Q02447 781 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 CACNB1Q02641 598 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 ALCAMQ13740 583 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 TRMT44Q8IYL2 757 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 SLC17A8Q8NDX2 589 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 SCFD1Q8WVM8 642 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 HPS3Q969F9 1004 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 MRFAP1L1Q96HT8 127 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 CCDC43Q96MW1 224 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 STRA6Q9BX79 667 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 AZI2Q9H6S1 392 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 FANCLQ9NW38 375 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 SAGE1Q9NXZ1 904 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 Q9Y3F1 56 aa16.52■□□□□ 0.24
CCDC88C-202ENST00000334448 USO1O60763 962 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 HIP1RO75146 1068 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 PPP1R37O75864 691 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 ADCY5O95622 1261 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 SMPD1P17405 629 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 SCP2P22307 547 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 CDC25BP30305 580 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 RFC5P40937 340 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 NPEPPSP55786 919 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 SPAG1Q07617 926 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 CCDC144BQ3MJ40 725 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 UTP14CQ5TAP6 766 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 PLA2G4FQ68DD2 849 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 PPP4R3CPQ6ZMV5 832 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 ZC3H3Q8IXZ2 948 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 ZNF507Q8TCN5 953 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 ATP8B4Q8TF62 1192 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 BBXQ8WY36 941 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 KIFAP3Q92845 792 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 COPS5Q92905 334 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 CEP170P1Q96L14 293 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 SMARCAD1Q9H4L7 1026 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 THAP9Q9H5L6 903 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 DHX33Q9H6R0 707 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 NRBP2Q9NSY0 501 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 RNF186Q9NXI6 227 aa16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 LARSQ9P2J5 1176 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 SEPT9Q9UHD8 586 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 ZHX1Q9UKY1 873 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 GNEQ9Y223 722 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-202ENST00000334448 PPFIA4O75335 1185 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 GNRH1P01148 92 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 PLS3P13797 630 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 CYP2B6P20813 491 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 ZNF75DP51815 510 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 PMS1P54277 932 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 RAD51AP2Q09MP3 1159 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 TMEM63BQ5T3F8 832 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 STXBP4Q6ZWJ1 553 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 GLIS3Q8NEA6 775 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 SPIRE2Q8WWL2 714 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 DUSP9Q99956 384 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 FGFBP2Q9BYJ0 223 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 KCTD10Q9H3F6 313 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 SEMA6BQ9H3T3 888 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 ATP6V0A4Q9HBG4 840 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 XPNPEP1Q9NQW7 623 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 KCNG1Q9UIX4 513 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms