RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CPSF3Q9UKF6 684 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 MTMR2Q13614 643 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 CROCCP2Q86T23 111 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 RAD54LQ92698 747 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 HOXC10Q9NYD6 342 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 CLDN3O15551 220 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 CPP00450 1065 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 FOXD4Q12950 439 aaPredicted RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 PSMD2Q13200 908 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 GRM4Q14833 912 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 ZNF568Q3ZCX4 644 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 RC3H1Q5TC82 1133 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 TRIM56Q9BRZ2 755 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 ELP3Q9H9T3 547 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 UBN1Q9NPG3 1134 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 PRPSAP2O60256 369 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 DDX27Q96GQ7 796 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 HMGCS2P54868 508 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 ZNF746Q6NUN9 644 aaPredicted RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 TTC30BQ8N4P2 665 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 HEMGNQ9BXL5 484 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 NGRNQ9NPE2 291 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 DNAJC12Q9UKB3 198 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 ITSN1Q15811 1721 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 XPAP23025 273 aaPredicted RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 RCN2Q14257 317 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 TWF2Q6IBS0 349 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 TTC30AQ86WT1 665 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 BCAS4Q8TDM0 211 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 GBP5Q96PP8 586 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 DENND3A2RUS2 1198 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 IRX4P78413 519 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 ATP6V0A4Q9HBG4 840 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 ZNF302Q9NR11 478 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 PSMA2P25787 234 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 LIG3P49916 1009 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 PPP6R3Q5H9R7 873 aaPredicted RBP10.96□□□□□ -0.65
CHD3-201ENST00000330494 ARL6IP4Q66PJ3 421 aaKnown RBP10.96□□□□□ -0.65
CHD3-201ENST00000330494 TBC1D16Q8TBP0 767 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 LRRC8CQ8TDW0 803 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 MTRQ99707 1265 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 NUF2Q9BZD4 464 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 BARHL2Q9NY43 387 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 ARHGEF18Q6ZSZ5 1173 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 UNC13DQ70J99 1090 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 ERICH1Q86X53 443 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 PARD3BQ8TEW8 1205 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 RNF139Q8WU17 664 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 HOMER3Q9NSC5 361 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 KLHL14Q9P2G3 628 aa10.96□□□□□ -0.65
CHD3-201ENST00000330494 FAM205CA6NFA0 338 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 FCER1AP12319 257 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 ARL4AP40617 200 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 TEX2Q8IWB9 1127 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 GOLGA8MH3BSY2 632 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 NR3C1P04150 777 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 SCN4BQ8IWT1 228 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 G3BP2Q9UN86 482 aaKnown RBP10.96□□□□□ -0.66
CHD3-201ENST00000330494 TYW5A2RUC4 315 aaKnown RBP10.96□□□□□ -0.66
CHD3-201ENST00000330494 PGRMC1O00264 195 aaKnown RBP10.96□□□□□ -0.66
CHD3-201ENST00000330494 PALMO75781 387 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 ECEL1O95672 775 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 GARSP41250 739 aaKnown RBP10.96□□□□□ -0.66
CHD3-201ENST00000330494 ZBED6P86452 979 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 LRRC63Q05C16 580 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 HP1BP3Q5SSJ5 553 aaPredicted RBP10.96□□□□□ -0.66
CHD3-201ENST00000330494 EXOC8Q8IYI6 725 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 MORC4Q8TE76 937 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 SPATA33Q96N06 139 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 SLITRK6Q9H5Y7 841 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 RGL1Q9NZL6 768 aa10.96□□□□□ -0.66
CHD3-201ENST00000330494 TTC36A6NLP5 189 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 EIF2AK1Q9BQI3 630 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 PIK3C2BO00750 1634 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 ESYT2A0FGR8 921 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 ANXA13P27216 316 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 LMBRD2Q68DH5 695 aaPredicted RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 NSUN4Q96CB9 384 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 CHMP6Q96FZ7 201 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 LXNQ9BS40 222 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 ZBED2Q9BTP6 218 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 MRPL47Q9HD33 250 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 PRDM5Q9NQX1 630 aaPredicted RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 USH1CQ9Y6N9 552 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 AP3B2Q13367 1082 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 TMEM270Q6UE05 265 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 SP8Q8IXZ3 490 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 RNF10Q8N5U6 811 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 ALKBH8Q96BT7 664 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 THOC1Q96FV9 657 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 ANAPC7Q9UJX3 599 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 IPO5O00410 1097 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 ZNF609O15014 1411 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 CCT5P48643 541 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 MMEL1Q495T6 779 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 CDKL2Q92772 493 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 SPATS2LQ9NUQ6 558 aaKnown RBP10.95□□□□□ -0.66
CHD3-201ENST00000330494 JAK3P52333 1124 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 ITPK1Q13572 414 aa10.95□□□□□ -0.66
CHD3-201ENST00000330494 MAPK6Q16659 721 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms