RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 MMEP08473 750 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 CASP1P29466 404 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 FGFR1OP2Q9NVK5 253 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 SRGAP2CP0DJJ0 459 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 SCP2P22307 547 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 ATXN3P54252 364 aaPredicted RBP8.46□□□□□ -1.05
CIITA-201ENST00000324288 AIFM3Q96NN9 605 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 KMT5AQ9NQR1 393 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 USP27XA6NNY8 438 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 E9PMD0 336 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 STK25O00506 426 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 HOXA13P31271 388 aaPredicted RBP8.46□□□□□ -1.05
CIITA-201ENST00000324288 TMED10P49755 219 aaKnown RBP8.46□□□□□ -1.05
CIITA-201ENST00000324288 METTL23Q86XA0 190 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 VSTM4Q8IW00 320 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 SIX6OS1Q8N1H7 587 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 CYGBQ8WWM9 190 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 RUNDC3BQ96NL0 473 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 GSDMAQ96QA5 445 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 COQ7Q99807 217 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 TRIM15Q9C019 465 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 FAM49AQ9H0Q0 323 aaPredicted RBP8.46□□□□□ -1.05
CIITA-201ENST00000324288 NHEJ1Q9H9Q4 299 aaPredicted RBP8.46□□□□□ -1.05
CIITA-201ENST00000324288 ESYT3A0FGR9 886 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 ESRRBO95718 433 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 PTK2Q05397 1052 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 NEUROG2Q9H2A3 272 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 AURKCQ9UQB9 309 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 MYH3P11055 1940 aa8.46□□□□□ -1.05
CIITA-201ENST00000324288 CFAP69A5D8W1 941 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 SSTR3P32745 418 aaPredicted RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 HEATR4Q86WZ0 1026 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 DCPSQ96C86 337 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 PAWRQ96IZ0 340 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 BTBD6Q96KE9 485 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 TTC7AQ9ULT0 858 aaPredicted RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 PDCD6IPQ8WUM4 868 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 FAF2Q96CS3 445 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 ZNF496Q96IT1 587 aaPredicted RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 MED23Q9ULK4 1368 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 XPO1O14980 1071 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 RPS8P62241 208 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 MCF2L2Q86YR7 1114 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 TBC1D22AQ8WUA7 517 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 EDEM3Q9BZQ6 932 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 GOLGA8QA0A0J9YX86 632 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 GOLGA8OA6NCC3 632 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 GOLGA8NF8WBI6 632 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 TTLL7Q6ZT98 887 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 CYFIP2Q96F07 1278 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 CCDC151A5D8V7 595 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 PRPSAP2O60256 369 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 PFKFB2O60825 505 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 ENO1P06733 434 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 KCNA6P17658 529 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 IQCDQ96DY2 449 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 AS3MTQ9HBK9 375 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 ZSWIM6Q9HCJ5 1215 aa8.46□□□□□ -1.06
CIITA-201ENST00000324288 SARS2Q9NP81 518 aaKnown RBP8.46□□□□□ -1.06
CIITA-201ENST00000324288 HAUS5O94927 633 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 SOX11P35716 441 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 KCNQ4P56696 695 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 PRAMEP78395 509 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 SNX19Q92543 992 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 MKL2Q9ULH7 1088 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 UGGT2Q9NYU1 1516 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 ATP8B1O43520 1251 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 PPP2R2AP63151 447 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 PLOD1Q02809 727 aaPredicted RBP8.45□□□□□ -1.06
CIITA-201ENST00000324288 KLC3Q6P597 504 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 C11orf74Q86VG3 221 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 ZNF507Q8TCN5 953 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 PRRC2BQ5JSZ5 2229 aaKnown RBP8.45□□□□□ -1.06
CIITA-201ENST00000324288 CTTNBP2Q8WZ74 1663 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 KRT4P19013 534 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.45□□□□□ -1.06
CIITA-201ENST00000324288 CYP2D7A0A087X1C5 515 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 HSPA8P11142 646 aaKnown RBP8.45□□□□□ -1.06
CIITA-201ENST00000324288 SERPINB3P29508 390 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 ATP6V0A1Q93050 837 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 SERPINI1Q99574 410 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 DSCC1Q9BVC3 393 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 SEC16AO15027 2179 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 OR6B2Q6IFH4 312 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 COA7Q96BR5 231 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 CD248Q9HCU0 757 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 PJA2O43164 708 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 ZNF211Q13398 564 aaPredicted RBP8.45□□□□□ -1.06
CIITA-201ENST00000324288 LRRC8EQ6NSJ5 796 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 ACAD11Q709F0 780 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 FRA10AC1Q70Z53 315 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 NRBP2Q9NSY0 501 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 V9GYQ6 96 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 GYS1P13807 737 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 PHKA1P46020 1223 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 IRX1P78414 480 aaPredicted RBP8.45□□□□□ -1.06
CIITA-201ENST00000324288 TFDP1Q14186 410 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 MIGA2Q7L4E1 593 aa8.45□□□□□ -1.06
CIITA-201ENST00000324288 GPR101Q96P66 508 aaPredicted RBP8.45□□□□□ -1.06
CIITA-201ENST00000324288 ORAI2Q96SN7 254 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms