RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 GAP43P17677 238 aa20.35■□□□□ 0.85
USP39-201ENST00000323701 FKBP3Q00688 224 aaKnown RBP20.35■□□□□ 0.85
USP39-201ENST00000323701 KCTD2Q14681 263 aa20.35■□□□□ 0.85
USP39-201ENST00000323701 FOXR2Q6PJQ5 311 aa20.35■□□□□ 0.85
USP39-201ENST00000323701 SMAP1Q8IYB5 467 aaPredicted RBP20.35■□□□□ 0.85
USP39-201ENST00000323701 TSG101Q99816 390 aa20.35■□□□□ 0.85
USP39-201ENST00000323701 NOC4LQ9BVI4 516 aaKnown RBP20.35■□□□□ 0.85
USP39-201ENST00000323701 PNMA3Q9UL41 463 aa20.35■□□□□ 0.85
USP39-201ENST00000323701 ODF2LQ9ULJ1 636 aa20.35■□□□□ 0.85
USP39-201ENST00000323701 RASSF10A6NK89 507 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 SOX10P56693 466 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 LY6KQ17RY6 165 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 BMT2Q1RMZ1 405 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 ODR4Q5SWX8 454 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 ZNF720Q7Z2F6 126 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 RDM1Q8NG50 284 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 MROH8Q9H579 483 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 LOXHD1Q8IVV2 1947 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 TGFB1I1O43294 461 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 XKR9Q5GH70 373 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 FAM114A1Q8IWE2 563 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 GPRC5AQ8NFJ5 357 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 ITIH6Q6UXX5 1313 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 SYNGAP1Q96PV0 1343 aa20.34■□□□□ 0.85
USP39-201ENST00000323701 ATP4AP20648 1035 aa20.33■□□□□ 0.85
USP39-201ENST00000323701 HUNKP57058 714 aa20.33■□□□□ 0.85
USP39-201ENST00000323701 ANKRD23Q86SG2 305 aa20.33■□□□□ 0.85
USP39-201ENST00000323701 ZC3H3Q8IXZ2 948 aaKnown RBP20.33■□□□□ 0.85
USP39-201ENST00000323701 CCDC155Q8N6L0 562 aa20.33■□□□□ 0.85
USP39-201ENST00000323701 TRAF3IP3Q9Y228 551 aa20.33■□□□□ 0.85
USP39-201ENST00000323701 PSAPP07602 524 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 ADAM9Q13443 819 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 E4F1Q66K89 784 aaPredicted RBP20.32■□□□□ 0.84
USP39-201ENST00000323701 FAM178BQ8IXR5 827 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 CLIC2O15247 247 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 MFAP3LO75121 409 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 FARP2O94887 1054 aaPredicted RBP20.32■□□□□ 0.84
USP39-201ENST00000323701 SUPT20HL2P0C7V6 817 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 NR2F2P24468 414 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 TBC1D8BQ0IIM8 1120 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 FBXO16Q8IX29 292 aaPredicted RBP20.32■□□□□ 0.84
USP39-201ENST00000323701 STRA6Q9BX79 667 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 TRMT1Q9NXH9 659 aaKnown RBP20.32■□□□□ 0.84
USP39-201ENST00000323701 SLC45A1Q9Y2W3 748 aa20.32■□□□□ 0.84
USP39-201ENST00000323701 AKR1B15C9JRZ8 316 aaPredicted RBP20.31■□□□□ 0.84
USP39-201ENST00000323701 ATG7O95352 703 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 ZBTB48P10074 688 aaPredicted RBP20.31■□□□□ 0.84
USP39-201ENST00000323701 PRKCEQ02156 737 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 SYCP1Q15431 976 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 EDRF1Q3B7T1 1238 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 VWA3BQ502W6 1294 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 PPFIBP1Q86W92 1011 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 SHCBP1Q8NEM2 672 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 PCYT2Q99447 389 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 NDST4Q9H3R1 872 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 ANKEF1Q9NU02 776 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 GSTTP1A0A1W2PQM5 241 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 PDXKO00764 312 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 PPP1R37O75864 691 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 KIF20AO95235 890 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 COPB2P35606 906 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 DNM2P50570 870 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 PDGFCQ9NRA1 345 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 SEL1LQ9UBV2 794 aa20.31■□□□□ 0.84
USP39-201ENST00000323701 IGSF9BQ9UPX0 1349 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 A0A1W2PQC6 194 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 TTC26A0AVF1 554 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 CASP4P49662 377 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 CHADLQ6NUI6 762 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 ATP6V0A1Q93050 837 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 CEP63Q96MT8 703 aa20.3■□□□□ 0.84
USP39-201ENST00000323701 BAG1Q99933 345 aaPredicted RBP20.3■□□□□ 0.84
USP39-201ENST00000323701 EIF3DO15371 548 aaKnown RBP eCLIP20.29■□□□□ 0.84
USP39-201ENST00000323701 GGPS1O95749 300 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 ADORA2AP29274 412 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 MTF1Q14872 753 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 MAN2A1Q16706 1144 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 CEP170P1Q96L14 293 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 CCDC43Q96MW1 224 aaKnown RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 TYW1Q9NV66 732 aaKnown RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 DDX41Q9UJV9 622 aaKnown RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 MYH9P35579 1960 aaKnown RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 TISP43B9A030 160 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 AKAP3O75969 853 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 ECM2O94769 699 aaPredicted RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 FGFR1OPO95684 399 aaKnown RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 CCDC40Q4G0X9 1142 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 FAM102BQ5T8I3 360 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 MIS18BP1Q6P0N0 1132 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 CCAR2Q8N163 923 aaKnown RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 BSNDQ8WZ55 320 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 COPS5Q92905 334 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 MORF4L1Q9UBU8 362 aa20.29■□□□□ 0.84
USP39-201ENST00000323701 SEPT9Q9UHD8 586 aaPredicted RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 MAFBQ9Y5Q3 323 aaPredicted RBP20.29■□□□□ 0.84
USP39-201ENST00000323701 EPHB6O15197 1021 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 RRP9O43818 475 aaKnown RBP20.28■□□□□ 0.84
USP39-201ENST00000323701 NR3C1P04150 777 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 PLS3P13797 630 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms