RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SMARCA1P28370 1054 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 DMP1Q13316 513 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 ZKSCAN8Q15776 578 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 CENPPQ6IPU0 288 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 RAB20Q9NX57 234 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 PEAK1Q9H792 1746 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 UCHL3P15374 230 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 ITPK1Q13572 414 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 RAB3IPQ96QF0 476 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 CCT8L2Q96SF2 557 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 MPHOSPH6Q99547 160 aaKnown RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 EHD2Q9NZN4 543 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 CD19P15391 556 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ATF7P17544 494 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 STAT2P52630 851 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 TSNAXIP1Q2TAA8 658 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ANKRD20A3Q5VUR7 823 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 TMEM139Q8IV31 216 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ANKS1AQ92625 1134 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 HOOK2Q96ED9 719 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 IL9RQ01113 521 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ZNF543Q08ER8 600 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 EDRF1Q3B7T1 1238 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 TMEM179Q6ZVK1 233 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 RFFLQ8WZ73 363 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 SYN2Q92777 582 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGEF1Q92888 912 aaKnown RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ELAC2Q9BQ52 826 aaKnown RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 CCPG1Q9ULG6 757 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ABCB11O95342 1321 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 TCP10L2B9ZVM9 353 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 TROVE2P10155 538 aaKnown RBP eCLIP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 LSP1P33241 339 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ZNF211Q13398 564 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 FAM133BQ5BKY9 247 aaKnown RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 TTBK2Q6IQ55 1244 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 C16orf86Q6ZW13 317 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 MCF2L2Q86YR7 1114 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 CCDC89Q8N998 374 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 MICAL1Q8TDZ2 1067 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 PDHBP11177 359 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 RWDD2BP57060 319 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 INTS5Q6P9B9 1019 aaKnown RBP15.93■□□□□ 0.14
TCOF1-201ENST00000323668 VPS52Q8N1B4 723 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ANKRD35Q8N283 1001 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 DBNDD1Q9H9R9 158 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGAP20Q9P2F6 1191 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 ANAPC5Q9UJX4 755 aa15.93■□□□□ 0.14
TCOF1-201ENST00000323668 A0A0U1RQJ8 604 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 GUCY2CP25092 1073 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 LIG4P49917 911 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 CAPN12Q6ZSI9 719 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGEF18Q6ZSZ5 1173 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 FLT1P17948 1338 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 NPHP3-ACAD11A0A0J9YXS1 232 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 ACTN1P12814 892 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 RAD51CO43502 376 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 KLRK1P26718 216 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 GPC5P78333 572 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 CCDC62Q6P9F0 684 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 SMIM5Q71RC9 77 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 SLC17A8Q8NDX2 589 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 SPATA20Q8TB22 786 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 SREK1Q8WXA9 508 aaKnown RBP15.92■□□□□ 0.14
TCOF1-201ENST00000323668 SEMA6BQ9H3T3 888 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 HNRNPDLO14979 420 aaKnown RBP15.92■□□□□ 0.14
TCOF1-201ENST00000323668 PPIP5K2O43314 1243 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 ANXA13P27216 316 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 PMS2P54278 862 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 LMNB2Q03252 620 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 GRB10Q13322 594 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 TBC1D10BQ4KMP7 808 aaPredicted RBP15.92■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGAP27Q6ZUM4 889 aa15.92■□□□□ 0.14
TCOF1-201ENST00000323668 FAM187AA6NFU0 413 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 RPSAP08865 295 aaKnown RBP15.91■□□□□ 0.14
TCOF1-201ENST00000323668 CC2D2BQ6DHV5 1058 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 CYP4F22Q6NT55 531 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 LARGE2Q8N3Y3 721 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 USP38Q8NB14 1042 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 SUPT20HQ8NEM7 779 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 TXNDC16Q9P2K2 825 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 SLC9A1P19634 815 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 JDP2Q8WYK2 163 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 TRIM11Q96F44 468 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 POC1B-GALNT4F8VUJ3 575 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 ACSL3O95573 720 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 CACNB3P54284 484 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 PPP4CP60510 307 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 GPSM2P81274 684 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 ADCY1Q08828 1119 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 ALCAMQ13740 583 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 NLGN1Q8N2Q7 840 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 ZNF473Q8WTR7 871 aaKnown RBP15.91■□□□□ 0.14
TCOF1-201ENST00000323668 H0YCG3 227 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 SOX5P35711 763 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 NUGGCQ68CJ6 796 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 RCSD1Q6JBY9 416 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 DEPTORQ8TB45 409 aa15.91■□□□□ 0.14
TCOF1-201ENST00000323668 SEL1LQ9UBV2 794 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms