RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 KCNA10Q16322 511 aa17.15■□□□□ 0.34
PDLIM5-202ENST00000318007 KIAA0753Q2KHM9 967 aa17.15■□□□□ 0.34
PDLIM5-202ENST00000318007 BRDTQ58F21 947 aaPredicted RBP17.15■□□□□ 0.34
PDLIM5-202ENST00000318007 TIGD1Q96MW7 591 aa17.15■□□□□ 0.34
PDLIM5-202ENST00000318007 GPRC5CQ9NQ84 441 aa17.15■□□□□ 0.34
PDLIM5-202ENST00000318007 PCDHA5Q9Y5H7 936 aa17.15■□□□□ 0.34
PDLIM5-202ENST00000318007 LGR5O75473 907 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 STBD1O95210 358 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 ASGR1P07306 291 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 CYP11B2P19099 503 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 MDM2Q00987 491 aaPredicted RBP17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 ARSHQ5FYA8 562 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 XKR3Q5GH77 459 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 LHX8Q68G74 356 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 RINT1Q6NUQ1 792 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 FBXO46Q6PJ61 603 aaPredicted RBP17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 PADI6Q6TGC4 694 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 SYT2Q8N9I0 419 aaPredicted RBP17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 AFAP1L1Q8TED9 768 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 VTI1AQ96AJ9 217 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 TRIM9Q9C026 710 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 CYP26B1Q9NR63 512 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 TBC1D7Q9P0N9 293 aa17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 ZNF215Q9UL58 517 aaPredicted RBP17.14■□□□□ 0.33
PDLIM5-202ENST00000318007 PURAQ00577 322 aaKnown RBP17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 OTUD6AQ7L8S5 288 aa17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 KAT2BQ92831 832 aa17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 REEP2Q9BRK0 252 aa17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 PLPPR4Q7Z2D5 763 aa17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 SH3RF1Q7Z6J0 888 aa17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 SMYD4Q8IYR2 804 aaPredicted RBP17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 CUEDC2Q9H467 287 aa17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 HOOK1Q9UJC3 728 aaKnown RBP17.13■□□□□ 0.33
PDLIM5-202ENST00000318007 DKC1O60832 514 aaKnown RBP eCLIP17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 INSRRP14616 1297 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 POLGP54098 1239 aaPredicted RBP17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 DPYDQ12882 1025 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 MFSD10Q14728 455 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 LRRC41Q15345 812 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 FAM47CQ5HY64 1035 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 FAM102BQ5T8I3 360 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 KANK3Q6NY19 840 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 LRRC71Q8N4P6 559 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 ATP8B4Q8TF62 1192 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 SMARCE1Q969G3 411 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 CCDC34Q96HJ3 373 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 ZNF668Q96K58 619 aaPredicted RBP17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 PPP1R16BQ96T49 567 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 SUGCTQ9HAC7 445 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 SETD4Q9NVD3 440 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 KIAA1468Q9P260 1216 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 USP25Q9UHP3 1055 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 Q9Y3F1 56 aa17.12■□□□□ 0.33
PDLIM5-202ENST00000318007 LYPLA2O95372 231 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 F2P00734 622 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 AMPD3Q01432 767 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 PPP4R3CPQ6ZMV5 832 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 RNF180Q86T96 592 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 METTL13Q8N6R0 699 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 BBXQ8WY36 941 aaPredicted RBP17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 NRBP2Q9NSY0 501 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 MAPK8IP1Q9UQF2 711 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 GTPBP6O43824 516 aaPredicted RBP17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 RPN1P04843 607 aaKnown RBP17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 ZNF200P98182 395 aaPredicted RBP17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 MAPK8IP2Q13387 824 aaPredicted RBP17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 DRP2Q13474 957 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 TMEM143Q96AN5 459 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 ARID2Q68CP9 1835 aa17.11■□□□□ 0.33
PDLIM5-202ENST00000318007 ZBTB42B2RXF5 422 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 HIP1RO75146 1068 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 GJB1P08034 283 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 HOXD8P13378 290 aaPredicted RBP17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 MUTP22033 750 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 PSEN2P49810 448 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 TBC1D8BQ0IIM8 1120 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 PPFIA1Q13136 1202 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 GIT2Q14161 759 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 C1orf186Q6ZWK4 172 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 ZNF333Q96JL9 665 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 UPF3AQ9H1J1 476 aaKnown RBP17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 PAK6Q9NQU5 681 aaPredicted RBP17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 ANKEF1Q9NU02 776 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 DBR1Q9UK59 544 aaKnown RBP17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 FRMPD3Q5JV73 1810 aa17.1■□□□□ 0.33
PDLIM5-202ENST00000318007 MSCO60682 206 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 SMIM10L2AP0DMW4 78 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 SMIM10L2BP0DMW5 78 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 KMT5BQ4FZB7 885 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 GLIS3Q8NEA6 775 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 SLC7A3Q8WY07 619 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 DNAJC19Q96DA6 116 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 FAM167AQ96KS9 214 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 MCOLN1Q9GZU1 580 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 MAGEF1Q9HAY2 307 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 PANK4Q9NVE7 773 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 TBCAO75347 108 aaKnown RBP17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 CLCN3P51790 818 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 HIC1Q14526 733 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 EMC2Q15006 297 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms