RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 RAVER2Q9HCJ3 691 aaKnown RBP17.18■□□□□ 0.34
USP42-201ENST00000306177 TMEM260Q9NX78 707 aa17.18■□□□□ 0.34
USP42-201ENST00000306177 LLGL1Q15334 1064 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 ARMCX2Q7L311 632 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 TRIM42Q8IWZ5 723 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 XXYLT1Q8NBI6 393 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 CCDC197Q8NCU1 140 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 BANK1Q8NDB2 785 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 ATP8B3O60423 1300 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 CSF1RP07333 972 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 RNASELQ05823 741 aaKnown RBP17.17■□□□□ 0.34
USP42-201ENST00000306177 NEDD1Q8NHV4 660 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 SLC12A6Q9UHW9 1150 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 LRFN2Q9ULH4 789 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 ZNF609O15014 1411 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 PPP1R16BQ96T49 567 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 SPATA31A1Q5TZJ5 1347 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 CCT5P48643 541 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 DIS3Q9Y2L1 958 aaKnown RBP17.17■□□□□ 0.34
USP42-201ENST00000306177 RAPH1Q70E73 1250 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 ADGRF4Q8IZF3 695 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 MARCH10Q8NA82 808 aaPredicted RBP17.17■□□□□ 0.34
USP42-201ENST00000306177 NSUN6Q8TEA1 469 aaKnown RBP17.17■□□□□ 0.34
USP42-201ENST00000306177 FAN1Q9Y2M0 1017 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 ZHX2Q9Y6X8 837 aa17.17■□□□□ 0.34
USP42-201ENST00000306177 ZC3H13Q5T200 1668 aaKnown RBP17.16■□□□□ 0.34
USP42-201ENST00000306177 F5H6K3 240 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 KLRC3Q07444 240 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 ARID5BQ14865 1188 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 QRICH1Q2TAL8 776 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 SH2D4BQ5SQS7 431 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 ERICH1Q86X53 443 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 WDR70Q9NW82 654 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 FRMPD1Q5SYB0 1578 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 KIDINS220Q9ULH0 1771 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 POTEB3A0JP26 581 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 POTECB2RU33 542 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 TMED2Q15363 201 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 MUM1Q2TAK8 710 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 ALS2CLQ60I27 953 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 SNRNP48Q6IEG0 339 aaKnown RBP17.16■□□□□ 0.34
USP42-201ENST00000306177 POTEBQ6S5H4 581 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 DNAAF3Q8N9W5 541 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 DYDC2Q96IM9 177 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 AP1M1Q9BXS5 423 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 CCDC188H7C350 402 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 EXOSC10Q01780 885 aaKnown RBP17.16■□□□□ 0.34
USP42-201ENST00000306177 ASPHQ12797 758 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 TOGARAM2Q6ZUX3 1019 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 KSR1Q8IVT5 923 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 WRNIP1Q96S55 665 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 FMO2Q99518 471 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 TRIM56Q9BRZ2 755 aaKnown RBP17.16■□□□□ 0.34
USP42-201ENST00000306177 ZBTB7AO95365 584 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 PRR29P0C7W0 189 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 SEMA3FQ13275 785 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 CUL1Q13616 776 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 ZNF667Q5HYK9 610 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 C12orf60Q5U649 245 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 ZDHHC9Q9Y397 364 aa17.16■□□□□ 0.34
USP42-201ENST00000306177 CD163L1Q9NR16 1453 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 SFNP31947 248 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 KIF2CQ99661 725 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 CNOT10Q9H9A5 744 aaKnown RBP17.15■□□□□ 0.34
USP42-201ENST00000306177 CACYBPQ9HB71 228 aaKnown RBP17.15■□□□□ 0.34
USP42-201ENST00000306177 SUGT1Q9Y2Z0 365 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 CLCN6P51797 869 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 TACO1Q9BSH4 297 aaKnown RBP17.15■□□□□ 0.34
USP42-201ENST00000306177 CEMIPQ8WUJ3 1361 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 CLDN3O15551 220 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 KNOP1Q1ED39 458 aaKnown RBP17.15■□□□□ 0.34
USP42-201ENST00000306177 C4orf50Q6ZRC1 276 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 THNSL1Q8IYQ7 743 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 LRRC53A6NM62 1247 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 GPC4O75487 556 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 AKR1B1P15121 316 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 LIG3P49916 1009 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 EIF3BP55884 814 aaKnown RBP17.15■□□□□ 0.34
USP42-201ENST00000306177 CFAP61Q8NHU2 1237 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 TBC1D16Q8TBP0 767 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 SMYD2Q9NRG4 433 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 RNF146Q9NTX7 359 aa17.15■□□□□ 0.34
USP42-201ENST00000306177 FGGP02679 453 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 P4HBP07237 508 aaKnown RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 ATP2C1P98194 919 aaPredicted RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 KCNH2Q12809 1159 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 NNTQ13423 1086 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 RBBP5Q15291 538 aaKnown RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 HDAC11Q96DB2 347 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 KIF28PB7ZC32 967 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 MKRN3Q13064 507 aaKnown RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 TRIP13Q15645 432 aaPredicted RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 SEL1LQ9UBV2 794 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 MIF4GDA9UHW6 222 aaKnown RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 SART1O43290 800 aaKnown RBP17.14■□□□□ 0.33
USP42-201ENST00000306177 MAPK6Q16659 721 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 PRR5LQ6MZQ0 368 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 EMBQ6PCB8 327 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 CATSPER4Q7RTX7 472 aa17.14■□□□□ 0.33
USP42-201ENST00000306177 IQSEC2Q5JU85 1478 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms