RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 BLZF1Q9H2G9 400 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 GINM1Q9NU53 330 aa11.89□□□□□ -0.51
LSM3-201ENST00000306024 STXBP3O00186 592 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 TCP1P17987 556 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 SMARCA1P28370 1054 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 MORC3Q14149 939 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 KRT71Q3SY84 523 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 TRMT1LQ7Z2T5 733 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 ANKRD13CQ8N6S4 541 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 GMCL1P1Q8NEA9 526 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 PARD3BQ8TEW8 1205 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 GMCL1Q96IK5 515 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 FAXDC2Q96IV6 333 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 NOD2Q9HC29 1040 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 TMEM260Q9NX78 707 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 ADD3Q9UEY8 706 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 SNED1Q8TER0 1413 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 HMGB1P1B2RPK0 211 aaPredicted RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 KRT18P05783 430 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 CDC25CP30307 473 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 UBXN2AP68543 259 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 TBC1D8BQ0IIM8 1120 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 PABPC4Q13310 644 aaKnown RBP eCLIP11.88□□□□□ -0.512e-15■■□□□ 14.1
LSM3-201ENST00000306024 CFAP221Q4G0U5 840 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 FAM133BQ5BKY9 247 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 MOB2Q70IA6 237 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 LMNTD2Q8IXW0 634 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 PLIN2Q99541 437 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 IFIH1Q9BYX4 1025 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 PKD2L1Q9P0L9 805 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 C19orf81C9J6K1 198 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 AGPSO00116 658 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 CELF2O95319 508 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 MYCLP12524 364 aaPredicted RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 BACE1P56817 501 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 RRP1BQ14684 758 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 CACNA2D4Q7Z3S7 1137 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 CCDC197Q8NCU1 140 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 RBM46Q8TBY0 533 aaKnown RBP11.88□□□□□ -0.51
LSM3-201ENST00000306024 NELFBQ8WX92 580 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 CALML4Q96GE6 196 aa11.88□□□□□ -0.51
LSM3-201ENST00000306024 ZNF18P17022 549 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 TRAPPC10P48553 1259 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 ATP11AP98196 1134 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 CALCRLQ16602 461 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 SLC30A9Q6PML9 568 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 SPATA4Q8NEY3 305 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 ZC3H15Q8WU90 426 aaKnown RBP11.87□□□□□ -0.51
LSM3-201ENST00000306024 ATP6V1G3Q96LB4 118 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 ZHX3Q9H4I2 956 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 RIOX1Q9H6W3 641 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 GPBP1L1Q9HC44 474 aaPredicted RBP11.87□□□□□ -0.51
LSM3-201ENST00000306024 LRRD1A4D1F6 860 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 DIAPH2O60879 1101 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 RANBP1P43487 201 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 SLC8A3P57103 927 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 STAMBPL1Q96FJ0 436 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 MYH1P12882 1939 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 FOSP01100 380 aaPredicted RBP11.87□□□□□ -0.51
LSM3-201ENST00000306024 PTPRAP18433 802 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 LDHDQ86WU2 507 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 NCAPG2Q86XI2 1143 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 FERMT2Q96AC1 680 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 EEF2KMTQ96G04 330 aa11.87□□□□□ -0.51
LSM3-201ENST00000306024 NSRP1Q9H0G5 558 aaKnown RBP11.87□□□□□ -0.51
LSM3-201ENST00000306024 IGKV6D-41A0A0C4DH26 115 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 LUC7L3O95232 432 aaKnown RBP11.86□□□□□ -0.51
LSM3-201ENST00000306024 FNTAP49354 379 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 TNNC1P63316 161 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 JAG1P78504 1218 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 SKOR1P84550 965 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 ADCY2Q08462 1091 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 PRR16Q569H4 304 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 TTMPQ5BVD1 217 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 MCF2L2Q86YR7 1114 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 HDAC7Q8WUI4 952 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 LRRC45Q96CN5 670 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 KLRG1Q96E93 195 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 NAP1L4Q99733 375 aaKnown RBP11.86□□□□□ -0.51
LSM3-201ENST00000306024 PPP1R12CQ9BZL4 782 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 HOXC10Q9NYD6 342 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 SMARCAL1Q9NZC9 954 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 PLAAQ9Y263 795 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 DOCK2Q92608 1830 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 LRRC37AA6NMS7 1700 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 VCAM1P19320 739 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 FUT2Q10981 343 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 VGLL4Q14135 290 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 COG2Q14746 738 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 TAF11Q15544 211 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 TYW1BQ6NUM6 668 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 KDM7AQ6ZMT4 941 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.86□□□□□ -0.51
LSM3-201ENST00000306024 ANKRD35Q8N283 1001 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 ANO3Q9BYT9 981 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 KIAA1683Q9H0B3 1180 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 LRWD1Q9UFC0 647 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 ABT1Q9ULW3 272 aaKnown RBP11.86□□□□□ -0.51
LSM3-201ENST00000306024 GRIN2DO15399 1336 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 TTC26A0AVF1 554 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms