RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 DDX39AO00148 427 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 PPP1R12BO60237 982 aaPredicted RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 NMT1P30419 496 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 ITIH3Q06033 890 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 DHX9Q08211 1270 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 ZCWPW2Q504Y3 356 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 ZNF713Q8N859 430 aaPredicted RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 TRIM51Q9BSJ1 452 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 DBNDD1Q9H9R9 158 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 CEP83Q9Y592 693 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 PCDHAC2Q9Y5I4 1007 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 GRIN2DO15399 1336 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 ZBTB39O15060 712 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 FGGP02679 453 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 NR3C1P04150 777 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 GCFC2P16383 781 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 RPL13P26373 211 aaKnown RBP13.79□□□□□ -0.2
LIG1-201ENST00000263274 PON1P27169 355 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 STAT1P42224 750 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 SEPT2Q15019 361 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 ARSHQ5FYA8 562 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 KRT27Q7Z3Y8 459 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 WHAMMQ8TF30 809 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 CCT8L2Q96SF2 557 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 GDF3Q9NR23 364 aa13.79□□□□□ -0.2
LIG1-201ENST00000263274 ROBO3Q96MS0 1386 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 PPP1R37O75864 691 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 TRIM49P0CI25 452 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 TRIM49CP0CI26 452 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 HSD17B3P37058 310 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 ORC2Q13416 577 aaPredicted RBP13.78□□□□□ -0.2
LIG1-201ENST00000263274 ZYXQ15942 572 aaKnown RBP13.78□□□□□ -0.2
LIG1-201ENST00000263274 CERKLQ49MI3 558 aaPredicted RBP13.78□□□□□ -0.2
LIG1-201ENST00000263274 GRIPAP1Q4V328 841 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 MICALCLQ6ZW33 695 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 IQCKQ8N0W5 287 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 LRRC45Q96CN5 670 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 INPP4AQ96PE3 977 aaPredicted RBP13.78□□□□□ -0.2
LIG1-201ENST00000263274 SH3GL2Q99962 352 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 SELENOSQ9BQE4 189 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 OSGEPQ9NPF4 335 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 AMFRQ9UKV5 643 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 SHOX2O60902 331 aaPredicted RBP13.78□□□□□ -0.2
LIG1-201ENST00000263274 SMARCA1P28370 1054 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 FLT3P36888 993 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 CPLX4Q7Z7G2 160 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 TAX1BP1Q86VP1 789 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 LMBR1Q8WVP7 490 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 ABCB11O95342 1321 aa13.78□□□□□ -0.2
LIG1-201ENST00000263274 GIT2Q14161 759 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 COBLL1Q53SF7 1204 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 NLRP14Q86W24 1093 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 CCDC26Q8TAB7 109 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 ZNF473Q8WTR7 871 aaKnown RBP13.77□□□□□ -0.2
LIG1-201ENST00000263274 CCDC114Q96M63 670 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 KCTD10Q9H3F6 313 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 ZBTB21Q9ULJ3 1066 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 RABGAP1Q9Y3P9 1069 aa13.77□□□□□ -0.2
LIG1-201ENST00000263274 TNFAIP3P21580 790 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 MDH1P40925 334 aaKnown RBP13.77□□□□□ -0.21
LIG1-201ENST00000263274 GALCP54803 685 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 RC3H1Q5TC82 1133 aaKnown RBP13.77□□□□□ -0.21
LIG1-201ENST00000263274 MCTP2Q6DN12 878 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 CTNNBL1Q8WYA6 563 aaPredicted RBP13.77□□□□□ -0.21
LIG1-201ENST00000263274 KAT2BQ92831 832 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 GANQ9H2C0 597 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 UTP11Q9Y3A2 253 aaKnown RBP13.77□□□□□ -0.21
LIG1-201ENST00000263274 SHMT1P34896 483 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 USP11P51784 963 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 CCDC121Q6ZUS5 278 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 CCDC25Q86WR0 208 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 FBXO11Q86XK2 927 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 FAM186BQ8IYM0 893 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 SLFN12Q8IYM2 578 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 RBM46Q8TBY0 533 aaKnown RBP13.77□□□□□ -0.21
LIG1-201ENST00000263274 CABS1Q96KC9 395 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 RUSC1Q9BVN2 902 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 AIPL1Q9NZN9 384 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 PCDHGC5Q9Y5F6 944 aa13.77□□□□□ -0.21
LIG1-201ENST00000263274 PLTPP55058 493 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 MAGOHP61326 146 aaKnown RBP13.76□□□□□ -0.21
LIG1-201ENST00000263274 ICA1Q05084 483 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 CDC42EP5Q6NZY7 148 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 BARGINQ6ZT62 677 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 IRF2BP2Q7Z5L9 587 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 ARFGAP2Q8N6H7 521 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 TEKT1Q969V4 418 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 MAGOHBQ96A72 148 aaKnown RBP13.76□□□□□ -0.21
LIG1-201ENST00000263274 SH2D3AQ9BRG2 576 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 EPN3Q9H201 632 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 PCIF1Q9H4Z3 704 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 TMOD4Q9NZQ9 345 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 AJAP1Q9UKB5 411 aaPredicted RBP13.76□□□□□ -0.21
LIG1-201ENST00000263274 SF3B2Q13435 895 aaKnown RBP13.76□□□□□ -0.21
LIG1-201ENST00000263274 COG2Q14746 738 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 CCDC174Q6PII3 467 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 MMS22LQ6ZRQ5 1243 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 TPCN2Q8NHX9 752 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 SYN2Q92777 582 aaPredicted RBP13.76□□□□□ -0.21
LIG1-201ENST00000263274 PBKQ96KB5 322 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms