RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 STXBP3O00186 592 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 HSPA8P11142 646 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 EIF2AK2P19525 551 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 NDUFA8P51970 172 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 FAM182BQ5T319 152 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 ENOX1Q8TC92 643 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 GCOM2Q9BZD3 368 aaPredicted RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 KCNK3O14649 394 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 TFAMQ00059 246 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 FAM83BQ5T0W9 1011 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 ZNF302Q9NR11 478 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 SLC25A27O95847 323 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 RPLP2P05387 115 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 P4HBP07237 508 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 ABCB4P21439 1286 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 HDLBPQ00341 1268 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 SNAPC2Q13487 334 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 XRRA1Q6P2D8 792 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 LINC00301Q8NCQ3 95 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 PSPC1Q8WXF1 523 aaKnown RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 TMEM106CQ9BVX2 250 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 USP32Q8NFA0 1604 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 SPDYE16A6NNV3 312 aaPredicted RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 H7C0C1 242 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 MCF2LO15068 1137 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 IGKV5-2P06315 115 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 ATP5OP48047 213 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 SPDYE2Q495Y8 402 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 RFX6Q8HWS3 928 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 PBKQ96KB5 322 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 TRPV6Q9H1D0 765 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 ZFYVE28Q9HCC9 887 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 NECTIN1Q15223 517 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 UNC13DQ70J99 1090 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 VSIG1Q86XK7 387 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 MCUR1Q96AQ8 359 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 TMEM47Q9BQJ4 181 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 TDRD3Q9H7E2 651 aaKnown RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 DCP1AQ9NPI6 582 aaPredicted RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 EPN1Q9Y6I3 576 aaPredicted RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 TBXAS1P24557 533 aaPredicted RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 MAPK4P31152 587 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 ZNF667Q5HYK9 610 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 MTRQ99707 1265 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 HAUS8Q9BT25 410 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 LZICQ8WZA0 190 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 STRIP2Q9ULQ0 834 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 RGS16O15492 202 aaPredicted RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 GADD45BO75293 160 aaPredicted RBP13.73□□□□□ -0.21
USP40-201ENST00000251722 CLTAP09496 248 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 EFNA5P52803 228 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 RPS6KA2Q15349 733 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 PALMDQ9NP74 551 aa13.73□□□□□ -0.21
USP40-201ENST00000251722 ZBTB7AO95365 584 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 SBK1Q52WX2 424 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 NUDT18Q6ZVK8 323 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 ENOSF1Q7L5Y1 443 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 CTAGE3PQ8IX95 158 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 LRRC43Q8N309 656 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 TDRD7Q8NHU6 1098 aaKnown RBP13.72□□□□□ -0.21
USP40-201ENST00000251722 PTPRMP28827 1452 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 SAMD3Q8N6K7 520 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 ZC3H15Q8WU90 426 aaKnown RBP13.72□□□□□ -0.21
USP40-201ENST00000251722 SERPING1P05155 500 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 STAT3P40763 770 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 PSMC5P62195 406 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 ARHGAP4P98171 946 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 ANKRD20A3Q5VUR7 823 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 KRT39Q6A163 491 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 RHOT2Q8IXI1 618 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 AGBL3Q8NEM8 1001 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 ZNF653Q96CK0 615 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 PDE11AQ9HCR9 933 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 AXIN2Q9Y2T1 843 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 PPP2R5DQ14738 602 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 RABL6Q3YEC7 729 aaPredicted RBP13.72□□□□□ -0.21
USP40-201ENST00000251722 FAM149B1Q96BN6 582 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 OSBPL5Q9H0X9 879 aaPredicted RBP13.72□□□□□ -0.21
USP40-201ENST00000251722 WDR70Q9NW82 654 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 ZNF148Q9UQR1 794 aa13.72□□□□□ -0.21
USP40-201ENST00000251722 DENND3A2RUS2 1198 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 PRPSAP2O60256 369 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 IFNB1P01574 187 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 PNMA6AP0CW24 399 aaPredicted RBP13.71□□□□□ -0.21
USP40-201ENST00000251722 KRT3P12035 628 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 ZNF34Q8IZ26 560 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 FTOQ9C0B1 505 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP40-201ENST00000251722 EHD2Q9NZN4 543 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 DYTNA2CJ06 578 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 EN1Q05925 392 aaPredicted RBP13.71□□□□□ -0.21
USP40-201ENST00000251722 CELF1Q92879 486 aaKnown RBP13.71□□□□□ -0.21
USP40-201ENST00000251722 ARHGEF2Q92974 986 aaKnown RBP13.71□□□□□ -0.21
USP40-201ENST00000251722 SORBS3O60504 671 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 GFAPP14136 432 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 CA4P22748 312 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 ZBED6P86452 979 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 LAMB3Q13751 1172 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 C1orf228Q6PIY5 440 aa13.71□□□□□ -0.21
USP40-201ENST00000251722 KLHL23Q8NBE8 558 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms