RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 EPB41L5Q9HCM4 733 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 NAGPAQ9UK23 515 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 ERLIN2O94905 339 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 GNA14O95837 355 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 ECE1P42892 770 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 IRAK1P51617 712 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 GUCY2DQ02846 1103 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 IQCEQ6IPM2 695 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 PLCB1Q9NQ66 1216 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 BHMG1C9JSJ3 638 aaPredicted RBP11.07□□□□□ -0.64
COPB1-201ENST00000249923 BACH1O14867 736 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 GUCY2FP51841 1108 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 GNGT1P63211 74 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 AP3B2Q13367 1082 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 CFAP221Q4G0U5 840 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 USP38Q8NB14 1042 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 CCDC17Q96LX7 622 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 IGSF9BQ9UPX0 1349 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 DDX3XO00571 662 aaKnown RBP eCLIP11.07□□□□□ -0.645e-24■■■■□ 22.8
COPB1-201ENST00000249923 LRRN2O75325 713 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 NR3C1P04150 777 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 CIITAP33076 1130 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 ERVK-9P63128 1117 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 ASIC2Q16515 512 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 DCAF17Q5H9S7 520 aaPredicted RBP11.07□□□□□ -0.64
COPB1-201ENST00000249923 SLC27A3Q5K4L6 730 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 ICE2Q659A1 982 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 EMBQ6PCB8 327 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 FRMD5Q7Z6J6 570 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 SLFN12Q8IYM2 578 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 GMCL1P1Q8NEA9 526 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 RUBCNQ92622 972 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 HSD17B14Q9BPX1 270 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 EIF2AK1Q9BQI3 630 aaKnown RBP11.07□□□□□ -0.64
COPB1-201ENST00000249923 BMP2KQ9NSY1 1161 aaPredicted RBP11.07□□□□□ -0.64
COPB1-201ENST00000249923 CAPN7Q9Y6W3 813 aa11.07□□□□□ -0.64
COPB1-201ENST00000249923 CETN3O15182 167 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 EPB41P11171 864 aaKnown RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 NMT1P30419 496 aaKnown RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 CTTNQ14247 550 aaKnown RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 RINT1Q6NUQ1 792 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 PPP4R3CPQ6ZMV5 832 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 PACS2Q86VP3 889 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 CDAN1Q8IWY9 1227 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 LNX1Q8TBB1 728 aaPredicted RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 FAM212AQ96EL1 285 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 AMNQ9BXJ7 453 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 PI4KBQ9UBF8 816 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 ARMCX3Q9UH62 379 aaPredicted RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 SPATA31A6Q5VVP1 1343 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 SLITRK3O94933 977 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 GH2P01242 217 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 AFPP02771 609 aaKnown RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 NPR1P16066 1061 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 HOXA7P31268 230 aaPredicted RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 PALB2Q86YC2 1186 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 GMCL1Q96IK5 515 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 SCLT1Q96NL6 688 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 PLCD4Q9BRC7 762 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 SYT11Q9BT88 431 aa11.06□□□□□ -0.64
COPB1-201ENST00000249923 NUCKS1Q9H1E3 243 aaKnown RBP11.06□□□□□ -0.64
COPB1-201ENST00000249923 SMIM23A6NLE4 172 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 BTNL10A8MVZ5 291 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PDXKO00764 312 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 KRT18P05783 430 aaKnown RBP11.05□□□□□ -0.64
COPB1-201ENST00000249923 ITGA4P13612 1032 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PRKCIP41743 596 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 UBXN2AP68543 259 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 CBWD6Q4V339 395 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 CBWD3Q5JTY5 395 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 CBWD5Q5RIA9 395 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 DDX42Q86XP3 938 aaKnown RBP eCLIP11.05□□□□□ -0.642e-15■■■■■ 26.8
COPB1-201ENST00000249923 BANK1Q8NDB2 785 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PPM1EQ8WY54 764 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 TDRD3Q9H7E2 651 aaKnown RBP11.05□□□□□ -0.64
COPB1-201ENST00000249923 BCS1LQ9Y276 419 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 STXBP5LQ9Y2K9 1186 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 NR2E1Q9Y466 385 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 TBX3O15119 743 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PPFIA4O75335 1185 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 FLT3P36888 993 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 UAP1Q16222 522 aaPredicted RBP11.05□□□□□ -0.64
COPB1-201ENST00000249923 EXOC3L4Q17RC7 722 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 SYDE2Q5VT97 1194 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 OTOP1Q7RTM1 612 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 FBXO11Q86XK2 927 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 OTUD6BQ8N6M0 293 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 CCDC43Q96MW1 224 aaKnown RBP11.05□□□□□ -0.64
COPB1-201ENST00000249923 JPH2Q9BR39 696 aaPredicted RBP11.05□□□□□ -0.64
COPB1-201ENST00000249923 GCNT4Q9P109 453 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PRR12Q9ULL5 1215 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 DNM3Q9UQ16 869 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 KIF4AO95239 1232 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 INPP5BP32019 993 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PAFAH1B1P43034 410 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 PDCLQ13371 301 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 DCAF12L1Q5VU92 463 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 C1orf186Q6ZWK4 172 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 TPCN2Q8NHX9 752 aa11.05□□□□□ -0.64
COPB1-201ENST00000249923 SLC30A5Q8TAD4 765 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms