RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 HOXA13P31271 388 aaPredicted RBP17.96■□□□□ 0.47
HOXD3-201ENST00000249440 DACT2Q5SW24 774 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 ALKBH5Q6P6C2 394 aaKnown RBP17.96■□□□□ 0.47
HOXD3-201ENST00000249440 FOXR1Q6PIV2 292 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 BTNL9Q6UXG8 535 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 USP38Q8NB14 1042 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 KRT12Q99456 494 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 RSPH14Q9UHP6 348 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 SERPINA10Q9UK55 444 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 NFU1Q9UMS0 254 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 GTPBP10A4D1E9 387 aaKnown RBP17.95■□□□□ 0.46
HOXD3-201ENST00000249440 PIK3CDO00329 1044 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 CARSP49589 748 aaKnown RBP17.95■□□□□ 0.46
HOXD3-201ENST00000249440 TNNC1P63316 161 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 RBM26Q5T8P6 1007 aaKnown RBP17.95■□□□□ 0.46
HOXD3-201ENST00000249440 CYP2W1Q8TAV3 490 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 IFT81Q8WYA0 676 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 SLC35C1Q96A29 364 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 RUSC1Q9BVN2 902 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 LCMT1Q9UIC8 334 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 OPLAHO14841 1288 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 NOP2P46087 812 aaKnown RBP17.95■□□□□ 0.46
HOXD3-201ENST00000249440 TRAF1Q13077 416 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 RBM46Q8TBY0 533 aaKnown RBP17.95■□□□□ 0.46
HOXD3-201ENST00000249440 FEZ2Q9UHY8 353 aaPredicted RBP17.95■□□□□ 0.46
HOXD3-201ENST00000249440 ATP8B3O60423 1300 aa17.95■□□□□ 0.46
HOXD3-201ENST00000249440 KCNK3O14649 394 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 CASP4P49662 377 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 RINT1Q6NUQ1 792 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 FLAD1Q8NFF5 587 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 ZNF622Q969S3 477 aaKnown RBP eCLIP17.94■□□□□ 0.46
HOXD3-201ENST00000249440 PBKQ96KB5 322 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 RGL1Q9NZL6 768 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 GCNT4Q9P109 453 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 SCN9AQ15858 1988 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 EML1O00423 815 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 EIF3DO15371 548 aaKnown RBP eCLIP17.94■□□□□ 0.46
HOXD3-201ENST00000249440 PPP1R12BO60237 982 aaPredicted RBP17.94■□□□□ 0.46
HOXD3-201ENST00000249440 ECE2O60344 883 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 KIF4AO95239 1232 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 GH2P01242 217 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 RNASE9P60153 205 aaKnown RBP17.94■□□□□ 0.46
HOXD3-201ENST00000249440 TEX2Q8IWB9 1127 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 LMBR1Q8WVP7 490 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 HSD17B14Q9BPX1 270 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 CAPS2Q9BXY5 557 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 TUFT1Q9NNX1 390 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 TMEM59LQ9UK28 342 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 PRR12Q9ULL5 1215 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 PCDHB13Q9Y5F0 798 aa17.94■□□□□ 0.46
HOXD3-201ENST00000249440 IGLV3-22A0A075B6J6 115 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 A6NNZ2 444 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 CLIC2O15247 247 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 CHRNA5P30532 468 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 IRAK1P51617 712 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 JAM2P57087 298 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 TUBB8Q3ZCM7 444 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 MREGQ8N565 214 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 WHAMMQ8TF30 809 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.93■□□□□ 0.46
HOXD3-201ENST00000249440 ZIM3Q96PE6 472 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 SIX2Q9NPC8 291 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 SYNPO2Q9UMS6 1093 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 SMCHD1A6NHR9 2005 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 ATRNL1Q5VV63 1379 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 ESYT3A0FGR9 886 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 ZSCAN5CA6NGD5 496 aaPredicted RBP17.93■□□□□ 0.46
HOXD3-201ENST00000249440 ENTPD3O75355 529 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 FAM13AO94988 1023 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 PSMC2P35998 433 aaKnown RBP17.93■□□□□ 0.46
HOXD3-201ENST00000249440 KCNA1Q09470 495 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 CFAP58Q5T655 872 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 OTOP1Q7RTM1 612 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 LRRC57Q8N9N7 239 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 RASSF4Q9H2L5 321 aa17.93■□□□□ 0.46
HOXD3-201ENST00000249440 TGFB1I1O43294 461 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 FERP16591 822 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 STAT2P52630 851 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 CTTNQ14247 550 aaKnown RBP17.92■□□□□ 0.46
HOXD3-201ENST00000249440 NFIL3Q16649 462 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 CCDC125Q86Z20 511 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 TPH2Q8IWU9 490 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 C10orf67Q8IYJ2 551 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 IQCKQ8N0W5 287 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 MYCT1Q8N699 235 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 ACTRT1Q8TDG2 376 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 PIGOQ8TEQ8 1089 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 POLD4Q9HCU8 107 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 INTUQ9ULD6 942 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 A0A0A6YYK5 440 aaPredicted RBP17.92■□□□□ 0.46
HOXD3-201ENST00000249440 SFI1A8K8P3 1242 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 SLITRK3O94933 977 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 H2AFZP0C0S5 128 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 TAL1P17542 331 aaPredicted RBP17.92■□□□□ 0.46
HOXD3-201ENST00000249440 H2AFVQ71UI9 128 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 BORCS6Q96GS4 357 aa17.92■□□□□ 0.46
HOXD3-201ENST00000249440 CCDC43Q96MW1 224 aaKnown RBP17.92■□□□□ 0.46
HOXD3-201ENST00000249440 TDRD3Q9H7E2 651 aaKnown RBP17.92■□□□□ 0.46
HOXD3-201ENST00000249440 A0A1W2PRG0 241 aa17.91■□□□□ 0.46
HOXD3-201ENST00000249440 RAD51CO43502 376 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms