RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 ATP6V0A1Q93050 837 aa16.43■□□□□ 0.22
CCDC47-201ENST00000225726 BCAS3Q9H6U6 928 aa16.43■□□□□ 0.22
CCDC47-201ENST00000225726 POLD4Q9HCU8 107 aa16.43■□□□□ 0.22
CCDC47-201ENST00000225726 TYW1Q9NV66 732 aaKnown RBP16.43■□□□□ 0.22
CCDC47-201ENST00000225726 MARSP56192 900 aaKnown RBP16.42■□□□□ 0.22
CCDC47-201ENST00000225726 ERVK-9P63128 1117 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 ERVK-24P63145 666 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 FSTL1Q12841 308 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 CPLX3Q8WVH0 158 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 MS4A4AQ96JQ5 239 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 FIZ1Q96SL8 496 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 MMP19Q99542 508 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 NAA15Q9BXJ9 866 aaKnown RBP16.42■□□□□ 0.22
CCDC47-201ENST00000225726 CCDC40Q4G0X9 1142 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 ERGIC2Q96RQ1 377 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 PRDM4Q9UKN5 801 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 CETN3O15182 167 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 NMT1P30419 496 aaKnown RBP16.42■□□□□ 0.22
CCDC47-201ENST00000225726 ACTR2P61160 394 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 ODR4Q5SWX8 454 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 MIS18BP1Q6P0N0 1132 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 FAM178BQ8IXR5 827 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 DAW1Q8N136 415 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 NDST4Q9H3R1 872 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 GABBR1Q9UBS5 961 aa16.42■□□□□ 0.22
CCDC47-201ENST00000225726 BACH1O14867 736 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 MAPTP10636 758 aaKnown RBP16.41■□□□□ 0.22
CCDC47-201ENST00000225726 FXR1P51114 621 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC47-201ENST00000225726 ADAM9Q13443 819 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 KCTD2Q14681 263 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 DNTTIP2Q5QJE6 756 aaKnown RBP16.41■□□□□ 0.22
CCDC47-201ENST00000225726 E4F1Q66K89 784 aaPredicted RBP16.41■□□□□ 0.22
CCDC47-201ENST00000225726 ABHD15Q6UXT9 468 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 ZNF720Q7Z2F6 126 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 R3HDMLQ9H3Y0 253 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 CELF2O95319 508 aaKnown RBP16.41■□□□□ 0.22
CCDC47-201ENST00000225726 SP2Q02086 613 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 SEPT14Q6ZU15 432 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 OTUD6AQ7L8S5 288 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 ANKRD23Q86SG2 305 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 NUP58Q9BVL2 599 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 ARID2Q68CP9 1835 aa16.41■□□□□ 0.22
CCDC47-201ENST00000225726 DNAJC25-GNG10A0A024R161 153 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 CCL15-CCL14A0A0B4J2E2 113 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 CCP110O43303 1012 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 USO1O60763 962 aaKnown RBP16.4■□□□□ 0.22
CCDC47-201ENST00000225726 FECHP22830 423 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 CCL15Q16663 113 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 XKR9Q5GH70 373 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 RETREG2Q8NC44 543 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 PCDHB13Q9Y5F0 798 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 USP27XA6NNY8 438 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 PDHXO00330 501 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 SUPT20HL2P0C7V6 817 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 NR2F2P24468 414 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 SYCP1Q15431 976 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 NFIL3Q16649 462 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 IQCDQ96DY2 449 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 BTBD19C9JJ37 291 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 NKRFO15226 690 aaKnown RBP eCLIP16.4■□□□□ 0.22
CCDC47-201ENST00000225726 CYP2C8P10632 490 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 ALCAMQ13740 583 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 SWSAP1Q6NVH7 229 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 FGD4Q96M96 766 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 DRC1Q96MC2 740 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 LARSQ9P2J5 1176 aaKnown RBP16.4■□□□□ 0.22
CCDC47-201ENST00000225726 ZMYM2Q9UBW7 1377 aa16.4■□□□□ 0.22
CCDC47-201ENST00000225726 LOC102724159A0A0B4J2E5 919 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 ATG7O95352 703 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 PWP2Q15269 919 aaKnown RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 UTP14CQ5TAP6 766 aaKnown RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 STRA6Q9BX79 667 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 ABHD10Q9NUJ1 306 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 CAPN11Q9UMQ6 739 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 IGSF9BQ9UPX0 1349 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 STBD1O95210 358 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 ZBTB48P10074 688 aaPredicted RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 PLS3P13797 630 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 RPL13P26373 211 aaKnown RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 PLA2G4FQ68DD2 849 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 ANO5Q75V66 913 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 CYFIP1Q7L576 1253 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 TRIM59Q8IWR1 403 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 GPRC5AQ8NFJ5 357 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 SMCR8Q8TEV9 937 aaPredicted RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 BRI3BPQ8WY22 251 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 TMEM150BA6NC51 233 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 SLC16A3O15427 465 aaKnown RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 ZNF862O60290 1169 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 PGK2P07205 417 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 TGFB3P10600 412 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 CCNA1P78396 465 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 ZC2HC1CQ53FD0 456 aaPredicted RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 FIGNQ5HY92 759 aa16.39■□□□□ 0.21
CCDC47-201ENST00000225726 CCDC60Q8IWA6 550 aaPredicted RBP16.39■□□□□ 0.21
CCDC47-201ENST00000225726 PPP1R37O75864 691 aa16.38■□□□□ 0.21
CCDC47-201ENST00000225726 NR3C1P04150 777 aa16.38■□□□□ 0.21
CCDC47-201ENST00000225726 UBA1P22314 1058 aaKnown RBP16.38■□□□□ 0.21
CCDC47-201ENST00000225726 SP4Q02446 784 aa16.38■□□□□ 0.21
CCDC47-201ENST00000225726 SPRYD7Q5W111 196 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms