RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 THSD7AQ9UPZ6 1657 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 H0YIN7 160 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 SLITRK3O94933 977 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 EPB41P11171 864 aaKnown RBP16.01■□□□□ 0.15
CNOT3-201ENST00000221232 MEI1Q5TIA1 1274 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 FAM76AQ8TAV0 307 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 TAF4BQ92750 862 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 SYN2Q92777 582 aaPredicted RBP16.01■□□□□ 0.15
CNOT3-201ENST00000221232 TRAF3IP3Q9Y228 551 aa16.01■□□□□ 0.15
CNOT3-201ENST00000221232 SMCHD1A6NHR9 2005 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 RAD17O75943 681 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 TRIM49P0CI25 452 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 TRIM49CP0CI26 452 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 MARSP56192 900 aaKnown RBP16■□□□□ 0.15
CNOT3-201ENST00000221232 RPS6KA1Q15418 735 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 FRMD5Q7Z6J6 570 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 FAM20AQ96MK3 541 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 CCDC43Q96MW1 224 aaKnown RBP16■□□□□ 0.15
CNOT3-201ENST00000221232 RUFY1Q96T51 708 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 VEZTQ9HBM0 779 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 CWC15Q9P013 229 aaKnown RBP16■□□□□ 0.15
CNOT3-201ENST00000221232 ZBTB21Q9ULJ3 1066 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 ZBTB12Q9Y330 459 aaPredicted RBP16■□□□□ 0.15
CNOT3-201ENST00000221232 TGFB1I1O43294 461 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 ABCB4P21439 1286 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 DDX42Q86XP3 938 aaKnown RBP eCLIP16■□□□□ 0.15
CNOT3-201ENST00000221232 WRAP73Q9P2S5 460 aaPredicted RBP16■□□□□ 0.15
CNOT3-201ENST00000221232 NAGPAQ9UK23 515 aa16■□□□□ 0.15
CNOT3-201ENST00000221232 MYH4Q9Y623 1939 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 UBR3Q6ZT12 1888 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 ARP10275 920 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 ATP1A2P50993 1020 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 STAT2P52630 851 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 EPHA7Q15375 998 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 MUM1L1Q5H9M0 696 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 GBP6Q6ZN66 633 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 EPM2AIP1Q7L775 607 aaPredicted RBP15.99■□□□□ 0.15
CNOT3-201ENST00000221232 ADAT2Q7Z6V5 191 aaKnown RBP15.99■□□□□ 0.15
CNOT3-201ENST00000221232 BANK1Q8NDB2 785 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 SLC35C1Q96A29 364 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 CENPHQ9H3R5 247 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 PDXKO00764 312 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 RAD51CO43502 376 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 C21orf2O43822 256 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 FOSP01100 380 aaPredicted RBP15.99■□□□□ 0.15
CNOT3-201ENST00000221232 HLTFQ14527 1009 aaKnown RBP eCLIP15.99■□□□□ 0.15
CNOT3-201ENST00000221232 ARHGAP44Q17R89 818 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 DPY19L2P1Q6NXN4 242 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 PPP4R3CPQ6ZMV5 832 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 OTOP1Q7RTM1 612 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 GMCL1Q96IK5 515 aa15.99■□□□□ 0.15
CNOT3-201ENST00000221232 GLIS2Q9BZE0 524 aaPredicted RBP15.99■□□□□ 0.15
CNOT3-201ENST00000221232 TYW1Q9NV66 732 aaKnown RBP15.99■□□□□ 0.15
CNOT3-201ENST00000221232 GAS7O60861 476 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 HSF2BPO75031 334 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 EYA4O95677 639 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 EPHB4P54760 987 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 IFT20Q8IY31 132 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 FAM186BQ8IYM0 893 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 CASKIN2Q8WXE0 1202 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 ZIM3Q96PE6 472 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 PCIF1Q9H4Z3 704 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 PPIP5K2O43314 1243 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 LRRN2O75325 713 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 RPL13P26373 211 aaKnown RBP15.98■□□□□ 0.15
CNOT3-201ENST00000221232 NAA35Q5VZE5 725 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 GMCL1P1Q8NEA9 526 aa15.98■□□□□ 0.15
CNOT3-201ENST00000221232 RRP15Q9Y3B9 282 aaKnown RBP15.98■□□□□ 0.15
CNOT3-201ENST00000221232 IGLV3-22A0A075B6J6 115 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 YDJCA8MPS7 323 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 TISP43B9A030 160 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 TBX3O15119 743 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 GLYCTKQ8IVS8 523 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 SIX2Q9NPC8 291 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 CHORDC1Q9UHD1 332 aaPredicted RBP15.97■□□□□ 0.15
CNOT3-201ENST00000221232 PCDHGC5Q9Y5F6 944 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 MYO1CO00159 1063 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 ODR4Q5SWX8 454 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 MOXD1Q6UVY6 613 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 ZNF572Q7Z3I7 529 aaPredicted RBP15.97■□□□□ 0.15
CNOT3-201ENST00000221232 HSD17B14Q9BPX1 270 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 OSGEPQ9NPF4 335 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 SERPINA10Q9UK55 444 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 GCOM1H8Y6P7 765 aaPredicted RBP15.97■□□□□ 0.15
CNOT3-201ENST00000221232 DDX3XO00571 662 aaKnown RBP eCLIP15.97■□□□□ 0.158e-8■■■■□ 25.8
CNOT3-201ENST00000221232 POLR2MP0CAP2 368 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 TTMPQ5BVD1 217 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 FOXR2Q6PJQ5 311 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 DAAM2Q86T65 1068 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 ZNF577Q9BSK1 485 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 DDX47Q9H0S4 455 aaKnown RBP15.97■□□□□ 0.15
CNOT3-201ENST00000221232 TSKSQ9UJT2 592 aa15.97■□□□□ 0.15
CNOT3-201ENST00000221232 ITGA4P13612 1032 aa15.96■□□□□ 0.15
CNOT3-201ENST00000221232 PRPF4BQ13523 1007 aaKnown RBP15.96■□□□□ 0.15
CNOT3-201ENST00000221232 CBWD6Q4V339 395 aa15.96■□□□□ 0.15
CNOT3-201ENST00000221232 CBWD3Q5JTY5 395 aa15.96■□□□□ 0.15
CNOT3-201ENST00000221232 CBWD5Q5RIA9 395 aa15.96■□□□□ 0.15
CNOT3-201ENST00000221232 CC2D2BQ6DHV5 1058 aa15.96■□□□□ 0.15
CNOT3-201ENST00000221232 FAM178BQ8IXR5 827 aa15.96■□□□□ 0.15
CNOT3-201ENST00000221232 ZC3H3Q8IXZ2 948 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms