RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ATXN10Q9UBB4 475 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 DAAM1Q9Y4D1 1078 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 RBM47A0AV96 593 aaKnown RBP15.85■□□□□ 0.13
PTPRA-201ENST00000216877 SMAPO00193 183 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 RASSF2P50749 326 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 STK4Q13043 487 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 ZNF211Q13398 564 aaPredicted RBP15.85■□□□□ 0.13
PTPRA-201ENST00000216877 ZNF654Q8IZM8 581 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 C1orf131Q8NDD1 294 aaKnown RBP15.85■□□□□ 0.13
PTPRA-201ENST00000216877 SCG3Q8WXD2 468 aaKnown RBP15.85■□□□□ 0.13
PTPRA-201ENST00000216877 LSM14BQ9BX40 385 aaKnown RBP15.85■□□□□ 0.13
PTPRA-201ENST00000216877 SEMA4AQ9H3S1 761 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 CUEDC2Q9H467 287 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 WDR17Q8IZU2 1322 aa15.85■□□□□ 0.13
PTPRA-201ENST00000216877 FOXP2O15409 715 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 CBX6O95503 412 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 CREB1P16220 341 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 SERPINB3P29508 390 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 MAP7Q14244 749 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 ZNF572Q7Z3I7 529 aaPredicted RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 CCDC84Q86UT8 332 aaPredicted RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 CEP70Q8NHQ1 597 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 PXDNQ92626 1479 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 FUT4P22083 530 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 PDIA5Q14554 519 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 LBRQ14739 615 aaKnown RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 VWA3BQ502W6 1294 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 DTHD1Q6ZMT9 781 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 LCA5Q86VQ0 697 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 FAM13CQ8NE31 585 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 ATXN2LQ8WWM7 1075 aaKnown RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 ZHX3Q9H4I2 956 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 ZWILCHQ9H900 591 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 DMAP1Q9NPF5 467 aaPredicted RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 NKIRAS1Q9NYS0 192 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 PTPN22Q9Y2R2 807 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 LRRC42Q9Y546 428 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 SLC4A7Q9Y6M7 1214 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 MYH13Q9UKX3 1938 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 A0A087X0T9 212 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 EYA2O00167 538 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 FAM228BP0C875 321 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 ALADP13716 330 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 CCNE1P24864 410 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 LRRC41Q15345 812 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 TTI2Q6NXR4 508 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 IFNL2Q8IZJ0 200 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 METTL13Q8N6R0 699 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 RBBP8NLQ8NC74 664 aaPredicted RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 MCUR1Q96AQ8 359 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 STMN4Q9H169 189 aaPredicted RBP15.84■□□□□ 0.13
PTPRA-201ENST00000216877 ETNK2Q9NVF9 386 aa15.84■□□□□ 0.13
PTPRA-201ENST00000216877 VPS52Q8N1B4 723 aa15.83■□□□□ 0.13
PTPRA-201ENST00000216877 RXFP1Q9HBX9 757 aa15.83■□□□□ 0.13
PTPRA-201ENST00000216877 TXNDC9O14530 226 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 CAPN9O14815 690 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 PEX11AO75192 247 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 C6orf118Q5T5N4 469 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 PDXDC2PQ6P474 469 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 HAUS1Q96CS2 278 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 CLMNQ96JQ2 1002 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 LRRC37BQ96QE4 947 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 NAP1L3Q99457 506 aaPredicted RBP15.83■□□□□ 0.12
PTPRA-201ENST00000216877 DUSP9Q99956 384 aaKnown RBP15.83■□□□□ 0.12
PTPRA-201ENST00000216877 TTYH3Q9C0H2 523 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 ARMT1Q9H993 441 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 ZNF532Q9HCE3 1301 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 COL22A1Q8NFW1 1626 aaPredicted RBP15.83■□□□□ 0.12
PTPRA-201ENST00000216877 BPIFB4P59827 614 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 IRGCQ6NXR0 463 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 FBXO25Q8TCJ0 367 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 ANKS1AQ92625 1134 aa15.83■□□□□ 0.12
PTPRA-201ENST00000216877 GPR75-ASB3A0A0A6YYF3 556 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 CYP27B1O15528 508 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 LRRC36Q1X8D7 754 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 MEI1Q5TIA1 1274 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 DNAJC1Q96KC8 554 aaKnown RBP15.82■□□□□ 0.12
PTPRA-201ENST00000216877 ADAM33Q9BZ11 813 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 IQCGQ9H095 443 aaKnown RBP15.82■□□□□ 0.12
PTPRA-201ENST00000216877 MTRF1LQ9UGC7 380 aaKnown RBP15.82■□□□□ 0.12
PTPRA-201ENST00000216877 ASB3Q9Y575 518 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 TMEM94Q12767 1356 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 MAP3K7O43318 606 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 INF2Q27J81 1249 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 MAP7D3Q8IWC1 876 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.82■□□□□ 0.123e-8■■■□□ 14.8
PTPRA-201ENST00000216877 PAIP2BQ9ULR5 123 aaKnown RBP15.82■□□□□ 0.12
PTPRA-201ENST00000216877 C5P01031 1676 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 MBD4O95243 580 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 ECHS1P30084 290 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 VHLP40337 213 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 DR1Q01658 176 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 DDB1Q16531 1140 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 MIGA1Q8NAN2 632 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 NGLY1Q96IV0 654 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 KCNMB3Q9NPA1 279 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 TMOD3Q9NYL9 352 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 LRCH1Q9Y2L9 728 aa15.82■□□□□ 0.12
PTPRA-201ENST00000216877 TRAF5O00463 557 aa15.81■□□□□ 0.12
PTPRA-201ENST00000216877 PLEKHA8P1O95397 391 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms