RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 TMEM47Q9BQJ4 181 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 KLC2Q9H0B6 622 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 NGRNQ9NPE2 291 aaKnown RBP14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PNMA3Q9UL41 463 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 NFU1Q9UMS0 254 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PCDHA6Q9UN73 950 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PCDHA8Q9Y5H6 950 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 RPS6KA4O75676 772 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 KRT27Q7Z3Y8 459 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 MASTLQ96GX5 879 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PACSIN2Q9UNF0 486 aaPredicted RBP14.56□□□□□ -0.08
SF3A1-201ENST00000215793 EPHB1P54762 984 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 SLC7A5Q01650 507 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ART3Q13508 389 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 TMCO4Q5TGY1 634 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 GIMAP8Q8ND71 665 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 DEPDC1BQ8WUY9 529 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 DACT3Q96B18 629 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 FGD4Q96M96 766 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ZNF341Q9BYN7 854 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 MAPK13O15264 365 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ZNF772Q68DY9 489 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 KRT39Q6A163 491 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 SCARA5Q6ZMJ2 495 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 EP400NLQ6ZTU2 488 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 UBN1Q9NPG3 1134 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 GINM1Q9NU53 330 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ABHD10Q9NUJ1 306 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 PPME1Q9Y570 386 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 NR3C1P04150 777 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 NFKBIAP25963 317 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ARL4CP56559 192 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 IL1RL1Q01638 556 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 MYCBPQ99417 103 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 CNOT8Q9UFF9 292 aaKnown RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 SPDYE2BA6NHP3 402 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 CLDN3O15551 220 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 IGKV5-2P06315 115 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 SPDYE6P0CI01 402 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 PMLP29590 882 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 NR1H3Q13133 447 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 RNF168Q8IYW5 571 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ATP6V0A4Q9HBG4 840 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 TOPORSQ9NS56 1045 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 SRP68Q9UHB9 627 aaKnown RBP14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ANAPC7Q9UJX3 599 aa14.55□□□□□ -0.08
SF3A1-201ENST00000215793 ADGRL3Q9HAR2 1447 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 ZNF18P17022 549 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 INPP1P49441 399 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 PRELPP51888 382 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 GPC5P78333 572 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 KRT76Q01546 638 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 CAV1Q03135 178 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 MTMR1Q13613 665 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 ALX1Q15699 326 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 FAM133BQ5BKY9 247 aaKnown RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 NUGGCQ68CJ6 796 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 HIBCHQ6NVY1 386 aaPredicted RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 DSTYKQ6XUX3 929 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 TRIM4Q9C037 500 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 NVLO15381 856 aaKnown RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 CYP2E1P05181 493 aaPredicted RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 PNMA6AP0CW24 399 aaPredicted RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 PLS3P13797 630 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 SPARCL1Q14515 664 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 MAPK6Q16659 721 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 TAF1BQ53T94 588 aaPredicted RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 CATSPER4Q7RTX7 472 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 TBC1D10CQ8IV04 446 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 WDR75Q8IWA0 830 aaKnown RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 TTLL6Q8N841 843 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 CCDC138Q96M89 665 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 MYO3BQ8WXR4 1341 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 ACSL3O95573 720 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 DMTNQ08495 405 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 OR6B3Q8NGW1 331 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 SH3RF3Q8TEJ3 882 aaPredicted RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 SEL1LQ9UBV2 794 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 ANGPTL2Q9UKU9 493 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 STRIP2Q9ULQ0 834 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 SLC8A2Q9UPR5 921 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 UGGT1Q9NYU2 1555 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 PALMO75781 387 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 KRT38O76015 456 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 CIITAP33076 1130 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 FBXO38Q6PIJ6 1188 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 THNSL1Q8IYQ7 743 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 PIGOQ8TEQ8 1089 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 CFAP36Q96G28 342 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 RMDN3Q96TC7 470 aa14.54□□□□□ -0.08
SF3A1-201ENST00000215793 UPF3AQ9H1J1 476 aaKnown RBP14.54□□□□□ -0.08
SF3A1-201ENST00000215793 KDM5CP41229 1560 aa14.53□□□□□ -0.08
SF3A1-201ENST00000215793 GSTA4O15217 222 aa14.53□□□□□ -0.08
SF3A1-201ENST00000215793 CALB1P05937 261 aa14.53□□□□□ -0.08
SF3A1-201ENST00000215793 TNFAIP2Q03169 654 aa14.53□□□□□ -0.08
SF3A1-201ENST00000215793 E2F5Q15329 346 aa14.53□□□□□ -0.08
SF3A1-201ENST00000215793 PDCD2Q16342 344 aaPredicted RBP14.53□□□□□ -0.08
SF3A1-201ENST00000215793 SFR1Q86XK3 245 aa14.53□□□□□ -0.08
SF3A1-201ENST00000215793 PARD3BQ8TEW8 1205 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms