RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 RnaselQ05921 735 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trim75Q3UWZ0 467 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 C87499Q3UX49 493 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Mfap3lQ9D3X9 409 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Sh2d4aQ9D7V1 421 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 L3mbtl1A2A5N8 826 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nlrp4eQ66X19 978 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Znf280dQ68FE8 974 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Acap2Q6ZQK5 770 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fnbp1Q80TY0 616 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tceal1Q921P9 165 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Apopt1Q9CQW7 192 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Dbndd2Q9CRD4 158 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Setd6Q9CWY3 473 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cd3dP04235 173 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 MagohP61327 146 aaKnown RBP12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Heatr3Q8BQM4 679 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 MagohbQ9CQL1 146 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc2a5Q9WV38 501 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Adgrl1Q80TR1 1466 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Stat4P42228 749 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Hddc2Q3SXD3 199 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 LnpkQ7TQ95 425 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rps6kc1Q8BLK9 1056 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 DtnbO70585 659 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc4a1P04919 929 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Bbs7Q8K2G4 715 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 ScgnQ91WD9 276 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trmt44Q9D2Q2 713 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ddx25Q9QY15 484 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cylc2B1AWN8 422 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 SfnO70456 248 aaKnown RBP12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Edem3Q2HXL6 931 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 WhammQ571B6 793 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ces5aQ6AW46 575 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Lig4Q8BTF7 911 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Setd1aE9PYH6 1716 aa12.73□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm15262A0A140LIQ5 728 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ino80dQ66JY2 873 aaKnown RBP12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Papd5Q68ED3 633 aaKnown RBP12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ccdc90bQ8C3X2 256 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ing2Q9ESK4 281 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nr2e3Q9QXZ7 395 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Apobec2Q9WV35 224 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm43638A0A0J9YU36 694 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Eddm13E9Q7F5 164 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm5861F6VCN9 180 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 4933402N22RikF7D1B3 190 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Hps5P59438 1126 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trpc1Q61056 793 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Asap2Q7SIG6 958 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Dnajc6Q80TZ3 938 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ipo5Q8BKC5 1097 aaKnown RBP12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Vmn1r213Q8R278 384 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Satb2Q8VI24 733 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Med15Q924H2 789 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Kbtbd12Q9D618 625 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc4a9E9PUP3 929 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 PhkbQ7TSH2 1085 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cxcl11Q9JHH5 100 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Kif14L0N7N1 1674 aaKnown RBP12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ttc13A0A1L1SSC7 844 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Qtrt2B8ZXI1 415 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc9a2Q3ZAS0 814 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nxf7Q80SZ6 620 aaKnown RBP12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fbxl5Q8C2S5 690 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Snx30Q8CE50 437 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trpc4Q9QUQ5 974 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Prss51A0A286YDY8 319 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tph1P17532 447 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cyp11b1Q3TG86 501 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 CoilQ5SU73 570 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rsad1Q5SUV1 442 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ppp2r2aQ6P1F6 447 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Snx16Q8C080 344 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nlgn1Q99K10 843 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tex12Q9CR81 123 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 RecqlQ9Z129 648 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm16430A6X8J1 155 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Olfr552E9Q545 317 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ppargc1aO70343 797 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Akr1b1P45376 316 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Heatr9Q5QNV8 569 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Sik1Q60670 779 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 EmsyQ8BMB0 1264 aaKnown RBP12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Llcfc1Q9D9P8 108 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zbtb12Q9Z150 459 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cav1P49817 178 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Runx2Q08775 607 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Usp28Q5I043 1051 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rtl3Q6P1Y1 553 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fam180aQ8BR21 173 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 4930504O13RikQ8C5Z9 145 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fam160b1Q8CDM8 764 aa12.72□□□□□ -0.37
Trim56-201ENSMUST00000054384 MpndQ3TV65 487 aa12.71□□□□□ -0.37
Trim56-201ENSMUST00000054384 Foxred2Q3USW5 665 aa12.71□□□□□ -0.37
Trim56-201ENSMUST00000054384 Anxa13Q99JG3 317 aa12.71□□□□□ -0.37
Trim56-201ENSMUST00000054384 Lmbrd1Q8K0B2 537 aa12.71□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gtf2ird1Q9JI57 1104 aaKnown RBP12.71□□□□□ -0.37
Trim56-201ENSMUST00000054384 Nckap5lQ6GQX2 1323 aa12.71□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 82.1 ms