RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 BIN1O00499 593 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ALDH3A1P30838 453 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ADCY1Q08828 1119 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 MKRN4PQ13434 485 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 HLTFQ14527 1009 aaKnown RBP eCLIP5.44□□□□□ -1.546e-7■■■■□ 22.5
SCN1A-218ENST00000640036 FSCN1Q16658 493 aaKnown RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 INAVAQ3KP66 663 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 DIS3L2Q8IYB7 885 aaKnown RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF784Q8NCA9 323 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 SPATC1LQ9H0A9 340 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 HIPK3Q9H422 1215 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 EMSYQ7Z589 1322 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 POTEB3A0JP26 581 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TBKBP1A7MCY6 615 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 CKMP06732 381 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 HSPA4P34932 840 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TECP42680 631 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 CYP27A1Q02318 531 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 WASHC5Q12768 1159 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 GTF2H3Q13889 308 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 NAA30Q147X3 362 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 KIZQ2M2Z5 673 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 PROSER3Q2NL68 480 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 POTEBQ6S5H4 581 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 OOSP2Q86WS3 158 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 MAP7D3Q8IWC1 876 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 EHBP1Q8NDI1 1231 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 DYNLL2Q96FJ2 89 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 SPACA7Q96KW9 195 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 SEPT5Q99719 369 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 APBA2Q99767 749 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 HAUS8Q9BT25 410 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 MSTO1Q9BUK6 570 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 PRG3Q9Y2Y8 225 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 RPTORQ8N122 1335 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TMEM265A0A087WTH1 108 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ASMTLO95671 621 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 PTGISQ16647 500 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 LONRF3Q496Y0 759 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 BMP2KLQ5H9B9 411 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 NECAB1Q8N987 351 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 NEK9Q8TD19 979 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ARNTL2Q8WYA1 636 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 SEC62Q99442 399 aaKnown RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 DISP2A7MBM2 1401 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TNS2Q63HR2 1409 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 hCG_1642624A0A1W2PR95 340 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 A6NNZ2 444 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ZBTB5O15062 677 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 DNAJC8O75937 253 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ERVK-9P63128 1117 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ERVK-24P63145 666 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 MCM6Q14566 821 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TUBB8Q3ZCM7 444 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF667Q5HYK9 610 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 CDC42EP5Q6NZY7 148 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TAF2Q6P1X5 1199 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 YIPF2Q9BWQ6 316 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ABCG4Q9H172 646 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 GIMAP4Q9NUV9 329 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 PCSK1P29120 753 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ADD2P35612 726 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 EFNA5P52803 228 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 MDM2Q00987 491 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PTK2Q05397 1052 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 NOTUMQ6P988 496 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CTR9Q6PD62 1173 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 TNIP3Q96KP6 325 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 EIF2AQ9BY44 585 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 EPC1Q9H2F5 836 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 DCTPP1Q9H773 170 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PCDHB4Q9Y5E5 795 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PCDHA10Q9Y5I2 948 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PIK3C2BO00750 1634 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 USP31Q70CQ4 1352 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 LRRC7Q96NW7 1537 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 POLRMTO00411 1230 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CD4P01730 458 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 XRCC5P13010 732 aaKnown RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 FPGSQ05932 587 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 NKX1-1Q15270 411 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 BEND3Q5T5X7 828 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 IQSEC1Q6DN90 963 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF558Q96NG5 402 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 FTHL17Q9BXU8 183 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 KIAA1586Q9HCI6 787 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 SUCLA2Q9P2R7 463 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 GABBR1Q9UBS5 961 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 CROCCQ5TZA2 2017 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 MYH11P35749 1972 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 WNT10BO00744 389 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ADORA2AP29274 412 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 ARL4AP40617 200 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 TEX2Q8IWB9 1127 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PRMT6Q96LA8 375 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-218ENST00000640036 SEZ6LQ9BYH1 1024 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 MST1RQ04912 1400 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 PRR23AA6NEV1 266 aa5.43□□□□□ -1.54
SCN1A-218ENST00000640036 FAM47DPA6NHR8 397 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms