RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PPP2R3CQ969Q6 453 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 SLC9A2Q9UBY0 812 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 SQORQ9Y6N5 450 aa22.21■■□□□ 1.15
CLN3-262ENST00000637699 STAG3L1P0CL83 205 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 CALM1P0DP23 149 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 CALM2P0DP24 149 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 CALM3P0DP25 149 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 GATMP50440 423 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 PAK2Q13177 524 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 PLCB4Q15147 1175 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 NAALADL2Q58DX5 795 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 HERC4Q5GLZ8 1057 aaPredicted RBP22.2■■□□□ 1.14
CLN3-262ENST00000637699 TMEM87BQ96K49 555 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 MTA3Q9BTC8 594 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 CELF4Q9BZC1 486 aaKnown RBP22.2■■□□□ 1.14
CLN3-262ENST00000637699 KCNH6Q9H252 994 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 KCNH7Q9NS40 1196 aa22.2■■□□□ 1.14
CLN3-262ENST00000637699 SCG2P13521 617 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 RBM23Q86U06 439 aaKnown RBP22.19■■□□□ 1.14
CLN3-262ENST00000637699 CYP2W1Q8TAV3 490 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 POF1BQ8WVV4 589 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 TNPO1Q92973 898 aaKnown RBP22.19■■□□□ 1.14
CLN3-262ENST00000637699 MSLNLQ96KJ4 702 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 MFSD14AQ96MC6 490 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 MXRA8Q9BRK3 442 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 CLEC1BQ9P126 229 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 LRFN2Q9ULH4 789 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 PCDHA2Q9Y5H9 948 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 SLC12A7Q9Y666 1083 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 IGSF9BQ9UPX0 1349 aa22.19■■□□□ 1.14
CLN3-262ENST00000637699 PPFIA3O75145 1194 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 NRIP1P48552 1158 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 STAT5BP51692 787 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 ACTR2P61160 394 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 TMEM266Q2M3C6 531 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 EFHBQ8N7U6 833 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 FANCBQ8NB91 859 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 SDF4Q9BRK5 362 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 LRRC2Q9BYS8 371 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 TMX1Q9H3N1 280 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 PCDHGC5Q9Y5F6 944 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 LOXHD1Q8IVV2 1947 aa22.18■■□□□ 1.14
CLN3-262ENST00000637699 KIAA1671Q9BY89 1806 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 EYA4O95677 639 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 ARP10275 920 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 LIFRP42702 1097 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 KRT76Q01546 638 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 NFX1Q12986 1120 aaKnown RBP22.17■■□□□ 1.14
CLN3-262ENST00000637699 TMTC3Q6ZXV5 915 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 PLPPR4Q7Z2D5 763 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 EDAQ92838 391 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 PGBD1Q96JS3 809 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 GINS2Q9Y248 185 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 ZNF318Q5VUA4 2279 aa22.17■■□□□ 1.14
CLN3-262ENST00000637699 SMIM35A0A1B0GVV1 85 aa22.16■■□□□ 1.14
CLN3-262ENST00000637699 MTHFD1LQ6UB35 978 aa22.16■■□□□ 1.14
CLN3-262ENST00000637699 BARX2Q9UMQ3 279 aaPredicted RBP22.16■■□□□ 1.14
CLN3-262ENST00000637699 TECTAO75443 2155 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 NFASCO94856 1347 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 SLC27A2O14975 620 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 SPOUT1Q5T280 376 aaKnown RBP22.15■■□□□ 1.14
CLN3-262ENST00000637699 MICU3Q86XE3 530 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 NME8Q8N427 588 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 SMRP1Q8NCR6 262 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 MICAL1Q8TDZ2 1067 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 PCDHB7Q9Y5E2 793 aa22.15■■□□□ 1.14
CLN3-262ENST00000637699 KDM3AQ9Y4C1 1321 aa22.14■■□□□ 1.14
CLN3-262ENST00000637699 GLP2RO95838 553 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 KLRC1P26715 233 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 SARSP49591 514 aaKnown RBP22.14■■□□□ 1.13
CLN3-262ENST00000637699 NAPAP54920 295 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 COASYQ13057 564 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 ITGB3BPQ13352 177 aaPredicted RBP22.14■■□□□ 1.13
CLN3-262ENST00000637699 WWC2Q6AWC2 1192 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 LSG1Q9H089 658 aaKnown RBP22.14■■□□□ 1.13
CLN3-262ENST00000637699 TLE6Q9H808 572 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 CDHR5Q9HBB8 845 aa22.14■■□□□ 1.13
CLN3-262ENST00000637699 AGO4Q9HCK5 861 aaKnown RBP22.14■■□□□ 1.13
CLN3-262ENST00000637699 DDX39AO00148 427 aaKnown RBP22.13■■□□□ 1.13
CLN3-262ENST00000637699 PER2O15055 1255 aa22.13■■□□□ 1.13
CLN3-262ENST00000637699 MGEA5O60502 916 aa22.13■■□□□ 1.13
CLN3-262ENST00000637699 CEP55Q53EZ4 464 aa22.13■■□□□ 1.13
CLN3-262ENST00000637699 TYW1BQ6NUM6 668 aa22.13■■□□□ 1.13
CLN3-262ENST00000637699 RIC8AQ9NPQ8 531 aa22.13■■□□□ 1.13
CLN3-262ENST00000637699 NOC2LQ9Y3T9 749 aaKnown RBP22.13■■□□□ 1.13
CLN3-262ENST00000637699 USP15Q9Y4E8 981 aaPredicted RBP22.13■■□□□ 1.13
CLN3-262ENST00000637699 PCDHB12Q9Y5F1 795 aa22.13■■□□□ 1.13
CLN3-262ENST00000637699 PLXNA4Q9HCM2 1894 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 TBKBP1A7MCY6 615 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 LOC730098B7Z3J9 87 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 BACH1O14867 736 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 RPS6KA5O75582 802 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 FAM102BQ5T8I3 360 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 CREB3L3Q68CJ9 461 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 SYNE3Q6ZMZ3 975 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 TRIM67Q6ZTA4 783 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 PBXIP1Q96AQ6 731 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 ADAM2Q99965 735 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 ANO3Q9BYT9 981 aa22.12■■□□□ 1.13
CLN3-262ENST00000637699 ERVK-5Q9HDB9 667 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms