RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 RNF20Q5VTR2 975 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 CRIPAKQ8N1N5 446 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 ZNF713Q8N859 430 aaPredicted RBP20.4■□□□□ 0.86
CIITA-215ENST00000637439 LINC01599Q8WXQ3 324 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 UIMC1Q96RL1 719 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 LRRC2Q9BYS8 371 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 CELF4Q9BZC1 486 aaKnown RBP20.4■□□□□ 0.86
CIITA-215ENST00000637439 GLT8D2Q9H1C3 349 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 ANO2Q9NQ90 1003 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 RNF216Q9NWF9 866 aaPredicted RBP20.4■□□□□ 0.86
CIITA-215ENST00000637439 PADI3Q9ULW8 664 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 IGSF9BQ9UPX0 1349 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 KDM3AQ9Y4C1 1321 aa20.4■□□□□ 0.86
CIITA-215ENST00000637439 SCG2P13521 617 aa20.39■□□□□ 0.85
CIITA-215ENST00000637439 ADCY7P51828 1080 aa20.39■□□□□ 0.85
CIITA-215ENST00000637439 WWC2Q6AWC2 1192 aa20.39■□□□□ 0.85
CIITA-215ENST00000637439 APOA5Q6Q788 366 aa20.39■□□□□ 0.85
CIITA-215ENST00000637439 RTN4RL1Q86UN2 441 aaPredicted RBP20.39■□□□□ 0.85
CIITA-215ENST00000637439 ALG13Q9NP73 1137 aaKnown RBP20.39■□□□□ 0.85
CIITA-215ENST00000637439 MRPL42Q9Y6G3 142 aaKnown RBP20.39■□□□□ 0.85
CIITA-215ENST00000637439 CNTNAP5Q8WYK1 1306 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 MBTPS2O43462 519 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 ATG7O95352 703 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 KRT76Q01546 638 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 TMEM62Q0P6H9 643 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 AP3B2Q13367 1082 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 SMAD4Q13485 552 aaKnown RBP20.38■□□□□ 0.85
CIITA-215ENST00000637439 COL9A3Q14050 684 aaPredicted RBP20.38■□□□□ 0.85
CIITA-215ENST00000637439 CYP2W1Q8TAV3 490 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 ZBTB10Q96DT7 871 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 IGFLR1Q9H665 355 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 AGO4Q9HCK5 861 aaKnown RBP20.38■□□□□ 0.85
CIITA-215ENST00000637439 LRFN2Q9ULH4 789 aa20.38■□□□□ 0.85
CIITA-215ENST00000637439 MEIS1O00470 390 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 ARP10275 920 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 DLX2Q07687 328 aaPredicted RBP20.37■□□□□ 0.85
CIITA-215ENST00000637439 ADAM15Q13444 863 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 ODR4Q5SWX8 454 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 FAM160B1Q5W0V3 765 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 MTHFD1LQ6UB35 978 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 NIPA1Q7RTP0 329 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 TRAPPC12Q8WVT3 735 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 ANO3Q9BYT9 981 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 CD207Q9UJ71 328 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 LOXHD1Q8IVV2 1947 aa20.37■□□□□ 0.85
CIITA-215ENST00000637439 ZBTB43O43298 467 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 HBP1O60381 514 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 TBX10O75333 385 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 ITGB1P05556 798 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 IRS1P35568 1242 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 ZNF76P36508 570 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 SREBF1P36956 1147 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 ITGB3BPQ13352 177 aaPredicted RBP20.36■□□□□ 0.85
CIITA-215ENST00000637439 CAMK1Q14012 370 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 CLUL1Q15846 466 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 RTN1Q16799 776 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 KLHL23Q8NBE8 558 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 SPPL3Q8TCT6 385 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 NEK1Q96PY6 1258 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 KCNH6Q9H252 994 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 V9GY48 417 aaPredicted RBP20.36■□□□□ 0.85
CIITA-215ENST00000637439 MUC6Q6W4X9 2439 aa20.36■□□□□ 0.85
CIITA-215ENST00000637439 COL1A2P08123 1366 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 KIAA1671Q9BY89 1806 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 IGKV6D-21A0A0A0MT36 114 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 SMCO2A6NFE2 343 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 BACH1O14867 736 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 KLRC1P26715 233 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 GTF2F1P35269 517 aaKnown RBP eCLIP20.35■□□□□ 0.85
CIITA-215ENST00000637439 SARSP49591 514 aaKnown RBP20.35■□□□□ 0.85
CIITA-215ENST00000637439 NDUFV1P49821 464 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 PAN2Q504Q3 1202 aaKnown RBP20.35■□□□□ 0.85
CIITA-215ENST00000637439 TYW1BQ6NUM6 668 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 PGBD1Q96JS3 809 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 BARHL2Q9NY43 387 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 PCDHB7Q9Y5E2 793 aa20.35■□□□□ 0.85
CIITA-215ENST00000637439 STXBP3O00186 592 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 LINC01565O15544 149 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 CSPG5O95196 566 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 IRX6P78412 446 aaPredicted RBP20.34■□□□□ 0.85
CIITA-215ENST00000637439 FUT2Q10981 343 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 NFX1Q12986 1120 aaKnown RBP20.34■□□□□ 0.85
CIITA-215ENST00000637439 ZNF484Q5JVG2 852 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 ABHD15Q6UXT9 468 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 DHX32Q7L7V1 743 aaKnown RBP20.34■□□□□ 0.85
CIITA-215ENST00000637439 EFHBQ8N7U6 833 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 ATP8B4Q8TF62 1192 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 POF1BQ8WVV4 589 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 TMX1Q9H3N1 280 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 AAASQ9NRG9 546 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 C1orf112Q9NSG2 853 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 PCDHB12Q9Y5F1 795 aa20.34■□□□□ 0.85
CIITA-215ENST00000637439 RPS6KA5O75582 802 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 EYA4O95677 639 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 DNAJB1P25685 340 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 CLK2P49760 499 aaKnown RBP20.33■□□□□ 0.85
CIITA-215ENST00000637439 RCAN1P53805 252 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 EXOSC10Q01780 885 aaKnown RBP20.33■□□□□ 0.85
CIITA-215ENST00000637439 UBE3AQ05086 875 aa20.33■□□□□ 0.85
CIITA-215ENST00000637439 HERC4Q5GLZ8 1057 aaPredicted RBP20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms