RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 HIC1Q14526 733 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 ZNF618Q5T7W0 954 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 CNKSR3Q6P9H4 555 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 FBXO22Q8NEZ5 403 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 MRPL38Q96DV4 380 aaKnown RBP13.21□□□□□ -0.29
CLN3-257ENST00000637110 PHOX2BQ99453 314 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 SH3GLB2Q9NR46 395 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 NFASCO94856 1347 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 NRCAMQ92823 1304 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 CFAP54Q96N23 3096 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 ABHD14A-ACY1A0A1B0GW23 586 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 C19orf67A6NJJ6 358 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 RSPH10B2B2RC85 870 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 MEIS1O00470 390 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 BACH1O14867 736 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 ADAMTS3O15072 1205 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 CTSHP09668 335 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 RSPH10BP0C881 870 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 AK2P54819 239 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 ACTR2P61160 394 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 SCRN1Q12765 414 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 PRR16Q569H4 304 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 EP400NLQ6ZTU2 488 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 SERINC5Q86VE9 423 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 TNPO1Q92973 898 aaKnown RBP13.2□□□□□ -0.3
CLN3-257ENST00000637110 WNT8BQ93098 351 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 PABPC5Q96DU9 382 aaKnown RBP13.2□□□□□ -0.3
CLN3-257ENST00000637110 ZNF577Q9BSK1 485 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 TRPC6Q9Y210 931 aa13.2□□□□□ -0.3
CLN3-257ENST00000637110 KAT6AQ92794 2004 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 FAM86B1E9PN63 330 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 NBNO60934 754 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 CYP3A4P08684 503 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 FAM86B2P0C5J1 330 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 XBP1P17861 261 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 STAT5BP51692 787 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 NEK4P51957 841 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 DEFB103AP81534 67 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 SETQ01105 290 aaPredicted RBP13.19□□□□□ -0.3
CLN3-257ENST00000637110 ITGB3BPQ13352 177 aaPredicted RBP13.19□□□□□ -0.3
CLN3-257ENST00000637110 TRIM71Q2Q1W2 868 aaKnown RBP13.19□□□□□ -0.3
CLN3-257ENST00000637110 HERC4Q5GLZ8 1057 aaPredicted RBP13.19□□□□□ -0.3
CLN3-257ENST00000637110 NIPA1Q7RTP0 329 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 TMCO2Q7Z6W1 182 aaPredicted RBP13.19□□□□□ -0.3
CLN3-257ENST00000637110 PRSS33Q8NF86 280 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 LMBR1Q8WVP7 490 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 IRF2BPLQ9H1B7 796 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 TPCN1Q9ULQ1 816 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 PCDHA4Q9UN74 947 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 INSL6Q9Y581 213 aa13.19□□□□□ -0.3
CLN3-257ENST00000637110 IPO5O00410 1097 aaKnown RBP13.18□□□□□ -0.3
CLN3-257ENST00000637110 NCK2O43639 380 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 GFRA3O60609 400 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 DTNBO60941 627 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 SEC24BO95487 1268 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 RBL2Q08999 1139 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 IKBKEQ14164 716 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 GRIK4Q16099 956 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 FAM160B1Q5W0V3 765 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 MIS18BP1Q6P0N0 1132 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 BMP8AQ7Z5Y6 402 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 RSPH3Q86UC2 560 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 SUGP1Q8IWZ8 645 aaKnown RBP13.18□□□□□ -0.3
CLN3-257ENST00000637110 CKAP2LQ8IYA6 745 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 BLIDQ8IZY5 108 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 BANK1Q8NDB2 785 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 AIFM3Q96NN9 605 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 SAMD11Q96NU1 681 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 C22orf23Q9BZE7 217 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 SAMM50Q9Y512 469 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 TECTAO75443 2155 aa13.18□□□□□ -0.3
CLN3-257ENST00000637110 EMSYQ7Z589 1322 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 TRIOO75962 3097 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 RRN3P2A6NIE6 340 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 PFKFB2O60825 505 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 LGR5O75473 907 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 INSRRP14616 1297 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 IRS1P35568 1242 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 TRMT1LQ7Z2T5 733 aaKnown RBP13.17□□□□□ -0.3
CLN3-257ENST00000637110 NECAB1Q8N987 351 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 WASF1Q92558 559 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 ZNF302Q9NR11 478 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 TBC1D22BQ9NU19 505 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 MUTYHQ9UIF7 546 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 TUBE1Q9UJT0 475 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 KCNJ14Q9UNX9 436 aa13.17□□□□□ -0.3
CLN3-257ENST00000637110 SPTBN4Q9H254 2564 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 IGLV3-22A0A075B6J6 115 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 CAND2O75155 1236 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 CXCL10P02778 98 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 HOXC8P31273 242 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 USP11P51784 963 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 GPNMBQ14956 572 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 PLCB4Q15147 1175 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 GALNT17Q6IS24 598 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 SWSAP1Q6NVH7 229 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 FAM117BQ6P1L5 589 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 TAF2Q6P1X5 1199 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 PDXDC2PQ6P474 469 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 PLPPR4Q7Z2D5 763 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms