RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 HOXC6P09630 235 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 PPP1R2P41236 205 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 RARRES1P49788 294 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 RAD51AP2Q09MP3 1159 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 TTLL4Q14679 1199 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 CCDC60Q8IWA6 550 aaPredicted RBP20.48■□□□□ 0.87
CLN3-254ENST00000637050 TRMT44Q8IYL2 757 aaKnown RBP20.48■□□□□ 0.87
CLN3-254ENST00000637050 HPS3Q969F9 1004 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 TINF2Q9BSI4 451 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 RWDD2AQ9UIY3 292 aa20.48■□□□□ 0.87
CLN3-254ENST00000637050 WDR81Q562E7 1941 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 SYNRGQ9UMZ2 1314 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 IGSF9BQ9UPX0 1349 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 GSTTP1A0A1W2PQM5 241 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 ZNF862O60290 1169 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 STBD1O95210 358 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 TXNP10599 105 aaKnown RBP20.47■□□□□ 0.87
CLN3-254ENST00000637050 TPM4P67936 248 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 CACNB1Q02641 598 aaPredicted RBP20.47■□□□□ 0.87
CLN3-254ENST00000637050 PAK1Q13153 545 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 STIM1Q13586 685 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 SARM1Q6SZW1 724 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 MLXIPQ9HAP2 919 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 SLC39A2Q9NP94 309 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 CTNND2Q9UQB3 1225 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 MAPK8IP1Q9UQF2 711 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 PCDHA2Q9Y5H9 948 aa20.47■□□□□ 0.87
CLN3-254ENST00000637050 GUCY2CP25092 1073 aa20.46■□□□□ 0.87
CLN3-254ENST00000637050 FAM26FQ5R3K3 315 aa20.46■□□□□ 0.87
CLN3-254ENST00000637050 SPATA1Q5VX52 437 aa20.46■□□□□ 0.87
CLN3-254ENST00000637050 NELFBQ8WX92 580 aa20.46■□□□□ 0.87
CLN3-254ENST00000637050 DHTKD1Q96HY7 919 aaPredicted RBP20.46■□□□□ 0.87
CLN3-254ENST00000637050 PDLIM2Q96JY6 352 aa20.46■□□□□ 0.87
CLN3-254ENST00000637050 MAFBQ9Y5Q3 323 aaPredicted RBP20.46■□□□□ 0.87
CLN3-254ENST00000637050 PSMA7O14818 248 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 STX17P56962 302 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 PLCB2Q00722 1185 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 HERC4Q5GLZ8 1057 aaPredicted RBP20.45■□□□□ 0.86
CLN3-254ENST00000637050 PADI6Q6TGC4 694 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 ANO5Q75V66 913 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 SEPT1Q8WYJ6 367 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 PPP1R9BQ96SB3 815 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 FANCLQ9NW38 375 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 GJD2Q9UKL4 321 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 ODF2LQ9ULJ1 636 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 NFE2L3Q9Y4A8 694 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 BACH1O14867 736 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 ECM2O94769 699 aaPredicted RBP20.45■□□□□ 0.86
CLN3-254ENST00000637050 ADCY5O95622 1261 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 CCDC173Q0VFZ6 552 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 OTUD6AQ7L8S5 288 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 DHX37Q8IY37 1157 aaKnown RBP20.45■□□□□ 0.86
CLN3-254ENST00000637050 GUF1Q8N442 669 aaKnown RBP20.45■□□□□ 0.86
CLN3-254ENST00000637050 SOCS4Q8WXH5 440 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 ABHD16BQ9H3Z7 469 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 ZNF302Q9NR11 478 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 COL4A3BPQ9Y5P4 624 aa20.45■□□□□ 0.86
CLN3-254ENST00000637050 TMEM150BA6NC51 233 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 RSPH10B2B2RC85 870 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 TNPO2O14787 897 aaKnown RBP20.44■□□□□ 0.86
CLN3-254ENST00000637050 TBCAO75347 108 aaKnown RBP20.44■□□□□ 0.86
CLN3-254ENST00000637050 RSPH10BP0C881 870 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 GAP43P17677 238 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 CTGFP29279 349 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 ZNF131P52739 623 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 PRKCEQ02156 737 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 TMEM63BQ5T3F8 832 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 UTP14CQ5TAP6 766 aaKnown RBP20.44■□□□□ 0.86
CLN3-254ENST00000637050 AFAP1L1Q8TED9 768 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 COPS5Q92905 334 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 PCYT2Q99447 389 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 GPR20Q99678 358 aa20.44■□□□□ 0.86
CLN3-254ENST00000637050 ZNF18P17022 549 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 RGS2P41220 211 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 IRF5Q13568 498 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 HSDL1Q3SXM5 330 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 XKR9Q5GH70 373 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 XKR3Q5GH77 459 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 PLA2G4FQ68DD2 849 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 SFR1Q86XK3 245 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 ZHX3Q9H4I2 956 aa20.43■□□□□ 0.86
CLN3-254ENST00000637050 ATP4AP20648 1035 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 CCNE1P24864 410 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 TCF7P36402 384 aaPredicted RBP20.42■□□□□ 0.86
CLN3-254ENST00000637050 NPEPPSP55786 919 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 ARHGAP1Q07960 439 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 MAPK7Q13164 816 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 ACVR2BQ13705 512 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 FAM160B1Q5W0V3 765 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 OLFML2BQ68BL8 750 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 GLIS3Q8NEA6 775 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 P2RX5Q93086 422 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 CCDC43Q96MW1 224 aaKnown RBP20.42■□□□□ 0.86
CLN3-254ENST00000637050 SPATA33Q96N06 139 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 APBA2Q99767 749 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 TIPINQ9BVW5 301 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 CFHR5Q9BXR6 569 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 FGFBP2Q9BYJ0 223 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 OLFML3Q9NRN5 406 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 DOCK3Q8IZD9 2030 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms