RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 KRT31Q15323 416 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 PTPN21Q16825 1174 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 RGMBQ6NW40 437 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 PADI6Q6TGC4 694 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 ABHD15Q6UXT9 468 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 EEPD1Q7L9B9 569 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 VSTM4Q8IW00 320 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 SCFD1Q8WVM8 642 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 CTAGE1Q96RT6 745 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 KCNF1Q9H3M0 494 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 GABBR1Q9UBS5 961 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 ZKSCAN5Q9Y2L8 839 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 COL4A3BPQ9Y5P4 624 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 PLXNB2O15031 1838 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 TMEM150BA6NC51 233 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 GAP43P17677 238 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 CASP5P51878 434 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 MORC4Q8TE76 937 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 MANSC4A6NHS7 340 aaPredicted RBP18.68■□□□□ 0.58
CLN3-252ENST00000636907 IGF2BP3O00425 579 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLN3-252ENST00000636907 GUCY2CP25092 1073 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 LRRC63Q05C16 580 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 FAM110CQ1W6H9 321 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 ZCWPW2Q504Y3 356 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 SWSAP1Q6NVH7 229 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 IMPACTQ9P2X3 320 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 ODF2LQ9ULJ1 636 aa18.68■□□□□ 0.58
CLN3-252ENST00000636907 WDR81Q562E7 1941 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 LRRC10BA6NIK2 292 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 BACH1O14867 736 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ZNF862O60290 1169 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 SUPT20HL2P0C7V6 817 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ADORA2AP29274 412 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ZNF131P52739 623 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 COPB1P53618 953 aaKnown RBP18.67■□□□□ 0.58
CLN3-252ENST00000636907 ARID5BQ14865 1188 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ZNF792Q3KQV3 632 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 UTP14CQ5TAP6 766 aaKnown RBP18.67■□□□□ 0.58
CLN3-252ENST00000636907 PLA2G4FQ68DD2 849 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 MIS18BP1Q6P0N0 1132 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 EPM2AIP1Q7L775 607 aaPredicted RBP18.67■□□□□ 0.58
CLN3-252ENST00000636907 TRMT1LQ7Z2T5 733 aaKnown RBP18.67■□□□□ 0.58
CLN3-252ENST00000636907 CREBRFQ8IUR6 639 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 CCDC60Q8IWA6 550 aaPredicted RBP18.67■□□□□ 0.58
CLN3-252ENST00000636907 NELFCDQ8IXH7 590 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 MYCT1Q8N699 235 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ANKRD20A12PQ8NF67 263 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ATP6V0A1Q93050 837 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 EEF2KMTQ96G04 330 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 SH2D3AQ9BRG2 576 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 PARVGQ9HBI0 331 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 OLFML3Q9NRN5 406 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 ANKEF1Q9NU02 776 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 TAB2Q9NYJ8 693 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 SYNGAP1Q96PV0 1343 aa18.67■□□□□ 0.58
CLN3-252ENST00000636907 LOC102724159A0A0B4J2E5 919 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 TEX33O43247 280 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 FARP2O94887 1054 aaPredicted RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 KIF20AO95235 890 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 ATG7O95352 703 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 ARIH2O95376 493 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 MYBP10242 640 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 TGFB3P10600 412 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 EEF1GP26641 437 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 MAPK7Q13164 816 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 NEDD9Q14511 834 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 PWP2Q15269 919 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 FILIP1LQ4L180 1135 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 FOXR2Q6PJQ5 311 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 ANO5Q75V66 913 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 CCDC43Q96MW1 224 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 TSG101Q99816 390 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 VPS16Q9H269 839 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 MRPL44Q9H9J2 332 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 GPBP1L1Q9HC44 474 aaPredicted RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 RTN4Q9NQC3 1192 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 MAGEC2Q9UBF1 373 aaPredicted RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 ASB14A6NK59 587 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 STRNO43815 780 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 USO1O60763 962 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 DKC1O60832 514 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLN3-252ENST00000636907 HIP1RO75146 1068 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 STBD1O95210 358 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 SLC10A3P09131 477 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 NPEPPSP55786 919 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 LY6KQ17RY6 165 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 XKR9Q5GH70 373 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 GPR142Q7Z601 462 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 FBXO16Q8IX29 292 aaPredicted RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 ABRAQ8N0Z2 381 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 DAW1Q8N136 415 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 CACTINQ8WUQ7 758 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 CNOT6LQ96LI5 555 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 KCTD10Q9H3F6 313 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 DDX41Q9UJV9 622 aaKnown RBP18.66■□□□□ 0.58
CLN3-252ENST00000636907 TLL2Q9Y6L7 1015 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 IVNS1ABPQ9Y6Y0 642 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 ADGRA2Q96PE1 1338 aa18.66■□□□□ 0.58
CLN3-252ENST00000636907 PLXNA1Q9UIW2 1896 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 PRPF6O94906 941 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms