RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SUPT20HL2P0C7V6 817 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 TXNP10599 105 aaKnown RBP22.36■■□□□ 1.17
CLN3-250ENST00000636839 HSDL1Q3SXM5 330 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 ANO5Q75V66 913 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 MAEAQ7L5Y9 396 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 C4orf19Q8IY42 314 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 NELFBQ8WX92 580 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 MLXIPQ9HAP2 919 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 NFE2L3Q9Y4A8 694 aa22.36■■□□□ 1.17
CLN3-250ENST00000636839 BACH1O14867 736 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 LYPLA2O95372 231 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ATP4AP20648 1035 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ERCC5P28715 1186 aaPredicted RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 RARRES1P49788 294 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 CAP1Q01518 475 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 NEDD9Q14511 834 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 CCL14Q16627 93 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 HERC4Q5GLZ8 1057 aaPredicted RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 PRAMEF19Q5SWL8 479 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 MAMDC4Q6UXC1 1216 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 RDM1Q8NG50 284 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ENOX1Q8TC92 643 aaKnown RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 PCYT2Q99447 389 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 SAMSN1Q9NSI8 373 aaKnown RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 PCDHA2Q9Y5H9 948 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 FRMD3A2A2Y4 597 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ARHGEF35A5YM69 484 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 SMTNL1A8MU46 457 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ATG7O95352 703 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 TBC1D8O95759 1140 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 CYP2B6P20813 491 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 MAP2K5Q13163 448 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 CELF3Q5SZQ8 465 aaKnown RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 MIS18BP1Q6P0N0 1132 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 PADI6Q6TGC4 694 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ZNF467Q7Z7K2 595 aaPredicted RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 CCDC47Q96A33 483 aaKnown RBP22.35■■□□□ 1.17
CLN3-250ENST00000636839 TINF2Q9BSI4 451 aa22.35■■□□□ 1.17
CLN3-250ENST00000636839 ADCYAP1R1P41586 468 aa22.34■■□□□ 1.17
CLN3-250ENST00000636839 METTL7BQ6UX53 244 aa22.34■■□□□ 1.17
CLN3-250ENST00000636839 KCTD17Q8N5Z5 321 aa22.34■■□□□ 1.17
CLN3-250ENST00000636839 GJD2Q9UKL4 321 aa22.34■■□□□ 1.17
CLN3-250ENST00000636839 PAK1Q13153 545 aa22.33■■□□□ 1.17
CLN3-250ENST00000636839 SFR1Q86XK3 245 aa22.33■■□□□ 1.17
CLN3-250ENST00000636839 CCDC65Q8IXS2 484 aa22.33■■□□□ 1.17
CLN3-250ENST00000636839 USP6NLQ92738 828 aa22.33■■□□□ 1.17
CLN3-250ENST00000636839 EEF2KMTQ96G04 330 aa22.33■■□□□ 1.17
CLN3-250ENST00000636839 DIS3Q9Y2L1 958 aaKnown RBP22.33■■□□□ 1.17
CLN3-250ENST00000636839 SYNRGQ9UMZ2 1314 aa22.33■■□□□ 1.17
CLN3-250ENST00000636839 LOC102724159A0A0B4J2E5 919 aa22.33■■□□□ 1.16
CLN3-250ENST00000636839 CASP5P51878 434 aa22.33■■□□□ 1.16
CLN3-250ENST00000636839 PWP2Q15269 919 aaKnown RBP22.33■■□□□ 1.16
CLN3-250ENST00000636839 SCFD2Q8WU76 684 aa22.33■■□□□ 1.16
CLN3-250ENST00000636839 DBR1Q9UK59 544 aaKnown RBP22.33■■□□□ 1.16
CLN3-250ENST00000636839 TNPO2O14787 897 aaKnown RBP22.32■■□□□ 1.16
CLN3-250ENST00000636839 TCF7P36402 384 aaPredicted RBP22.32■■□□□ 1.16
CLN3-250ENST00000636839 PRKCEQ02156 737 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 TTLL4Q14679 1199 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 XKR9Q5GH70 373 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 FAM26FQ5R3K3 315 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 TRIM50Q86XT4 487 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 DHX37Q8IY37 1157 aaKnown RBP22.32■■□□□ 1.16
CLN3-250ENST00000636839 ANP32BQ92688 251 aaKnown RBP22.32■■□□□ 1.16
CLN3-250ENST00000636839 GPR20Q99678 358 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 ZNF302Q9NR11 478 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 RWDD2AQ9UIY3 292 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 ZSWIM8A7E2V4 1837 aa22.32■■□□□ 1.16
CLN3-250ENST00000636839 USO1O60763 962 aaKnown RBP22.31■■□□□ 1.16
CLN3-250ENST00000636839 KCNV1Q6PIU1 500 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 DAW1Q8N136 415 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 ATP6V0A1Q93050 837 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 SPATA33Q96N06 139 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 TRIM5Q9C035 493 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 SEMA6BQ9H3T3 888 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 VTA1Q9NP79 307 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 WDR81Q562E7 1941 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 IGKV6D-21A0A0A0MT36 114 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 ADCY6O43306 1168 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 CYP2C19P33261 490 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 SOX10P56693 466 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 SPATA1Q5VX52 437 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 TRIM47Q96LD4 638 aa22.31■■□□□ 1.16
CLN3-250ENST00000636839 ZHX1Q9UKY1 873 aaPredicted RBP22.31■■□□□ 1.16
CLN3-250ENST00000636839 MAFBQ9Y5Q3 323 aaPredicted RBP22.31■■□□□ 1.16
CLN3-250ENST00000636839 IGSF9BQ9UPX0 1349 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 HIP1RO75146 1068 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 VEGFBP49765 207 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 MAPK7Q13164 816 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 ACVR2BQ13705 512 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 ANKRD40Q6AI12 368 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 SEPT1Q8WYJ6 367 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 PDLIM2Q96JY6 352 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 GPRC5CQ9NQ84 441 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 TBCAO75347 108 aaKnown RBP22.3■■□□□ 1.16
CLN3-250ENST00000636839 ZNF18P17022 549 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 PSMC4P43686 418 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 ARHGAP1Q07960 439 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 PSMD2Q13200 908 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 CT47A1Q5JQC4 288 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms