RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 ATP2C1P98194 919 aaPredicted RBP16.54■□□□□ 0.24
PNKP-221ENST00000627317 CEBPZQ03701 1054 aaKnown RBP16.54■□□□□ 0.24
PNKP-221ENST00000627317 TRIM71Q2Q1W2 868 aaKnown RBP16.54■□□□□ 0.24
PNKP-221ENST00000627317 FAM160B1Q5W0V3 765 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 ABHD15Q6UXT9 468 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 DEFB123Q8N688 67 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 C4orf32Q8N8J7 132 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 HERVK_113Q902F9 699 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 WNT8BQ93098 351 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 IPO9Q96P70 1041 aaKnown RBP16.54■□□□□ 0.24
PNKP-221ENST00000627317 USP28Q96RU2 1077 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 SMARCAD1Q9H4L7 1026 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 ZDHHC9Q9Y397 364 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 PCDHA10Q9Y5I2 948 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 ATP6V1DQ9Y5K8 247 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 CLIC4Q9Y696 253 aa16.54■□□□□ 0.24
PNKP-221ENST00000627317 LGR5O75473 907 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 ATG7O95352 703 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 GPNMBQ14956 572 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 TRAF7Q6Q0C0 670 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 B3GNT9Q6UX72 402 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 DTHD1Q6ZMT9 781 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 CCDC60Q8IWA6 550 aaPredicted RBP16.53■□□□□ 0.24
PNKP-221ENST00000627317 C7orf31Q8N865 590 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 RAB34Q9BZG1 259 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 ZNF302Q9NR11 478 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 MTMR10Q9NXD2 777 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 CXXC1Q9P0U4 656 aaPredicted RBP16.53■□□□□ 0.24
PNKP-221ENST00000627317 CHD7Q9P2D1 2997 aa16.53■□□□□ 0.24
PNKP-221ENST00000627317 POTEMA6NI47 508 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 H3BRB1 525 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 IQCF3P0C7M6 154 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 MARK3P27448 753 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 TECP42680 631 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 FXR2P51116 673 aaKnown RBP eCLIP16.52■□□□□ 0.24
PNKP-221ENST00000627317 ZNF200P98182 395 aaPredicted RBP16.52■□□□□ 0.24
PNKP-221ENST00000627317 SPIRE1Q08AE8 756 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 STK38Q15208 465 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 ATL3Q6DD88 541 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 SWSAP1Q6NVH7 229 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 PDXDC2PQ6P474 469 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 CAGE1Q8TC20 777 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 PCYT2Q99447 389 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 TUT1Q9H6E5 874 aaKnown RBP16.52■□□□□ 0.24
PNKP-221ENST00000627317 ERAP1Q9NZ08 941 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 GABBR1Q9UBS5 961 aa16.52■□□□□ 0.24
PNKP-221ENST00000627317 IGKV6D-21A0A0A0MT36 114 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 EML1O00423 815 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 PFKMP08237 780 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 SMIM10L2AP0DMW4 78 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 SMIM10L2BP0DMW5 78 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 NCLP19338 710 aaKnown RBP16.51■□□□□ 0.23
PNKP-221ENST00000627317 RFC2P35250 354 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 STAT5BP51692 787 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 PTK7Q13308 1070 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 BFSP2Q13515 415 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 EPHA7Q15375 998 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 ARL6IP4Q66PJ3 421 aaKnown RBP16.51■□□□□ 0.23
PNKP-221ENST00000627317 PLPPR4Q7Z2D5 763 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 SERINC5Q86VE9 423 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 CKAP2LQ8IYA6 745 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 AFAP1L1Q8TED9 768 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 ATP6V0A1Q93050 837 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 GUCD1Q96NT3 240 aa16.51■□□□□ 0.23
PNKP-221ENST00000627317 TTYH1Q9H313 450 aaPredicted RBP16.51■□□□□ 0.23
PNKP-221ENST00000627317 TFIP11Q9UBB9 837 aaKnown RBP16.51■□□□□ 0.23
PNKP-221ENST00000627317 EYSQ5T1H1 3165 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 IGSF9BQ9UPX0 1349 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 VWA3AA6NCI4 1184 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 YEATS4O95619 227 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 CKBP12277 381 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 NASPP49321 788 aaPredicted RBP16.5■□□□□ 0.23
PNKP-221ENST00000627317 SLC26A2P50443 739 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 ADAM17P78536 824 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 DNM1Q05193 864 aaKnown RBP16.5■□□□□ 0.23
PNKP-221ENST00000627317 PTPAQ15257 358 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 NEK9Q8TD19 979 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 CHMP5Q9NZZ3 219 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 LRWD1Q9UFC0 647 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 CFAP45Q9UL16 551 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 TRPC6Q9Y210 931 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 NOD1Q9Y239 953 aa16.5■□□□□ 0.23
PNKP-221ENST00000627317 TMEM265A0A087WTH1 108 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.49■□□□□ 0.23
PNKP-221ENST00000627317 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.49■□□□□ 0.23
PNKP-221ENST00000627317 DKC1O60832 514 aaKnown RBP eCLIP16.49■□□□□ 0.23
PNKP-221ENST00000627317 FGBP02675 491 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 P4HBP07237 508 aaKnown RBP16.49■□□□□ 0.23
PNKP-221ENST00000627317 SELPP16109 830 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 MARCKSP29966 332 aaPredicted RBP16.49■□□□□ 0.23
PNKP-221ENST00000627317 KRT85P78386 507 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 CYP4A11Q02928 519 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 MBTPS1Q14703 1052 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 SLC39A14Q15043 492 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 UGCGQ16739 394 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 LRRC8DQ7L1W4 858 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 OTOP2Q7RTS6 562 aa16.49■□□□□ 0.23
PNKP-221ENST00000627317 RPUSD2Q8IZ73 545 aaKnown RBP16.49■□□□□ 0.23
PNKP-221ENST00000627317 CCDC155Q8N6L0 562 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms