RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NEU4Q8WWR8 484 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ZDHHC5Q9C0B5 715 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 KIAA1683Q9H0B3 1180 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 CATSPERZQ9NTU4 200 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 SRPK3Q9UPE1 567 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 TRAF6Q9Y4K3 522 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ATP23Q9Y6H3 246 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ASXL2Q76L83 1435 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 IL13RA1P78552 427 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 DPTQ07507 201 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 PAK1Q13153 545 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 NFYCQ13952 458 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 GPR19Q15760 415 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 USP30Q70CQ3 517 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 OTOP2Q7RTS6 562 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 AMER2Q8N7J2 671 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 IL17DQ8TAD2 202 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 WDR48Q8TAF3 677 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 IKZF4Q9H2S9 585 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 INCENPQ9NQS7 918 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 FBXO10Q9UK96 956 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 CDC42EP3Q9UKI2 254 aa4.79□□□□□ -1.64
SCN1A-208ENST00000625916 PRAMEF25A6NGN4 478 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 MATN2O00339 956 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 AQP7O14520 342 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 KRT15P19012 456 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 HIBADHP31937 336 aaKnown RBP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 GJA4P35212 333 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 MSX2P35548 267 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 MEOX1P50221 254 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 PURAQ00577 322 aaKnown RBP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 HHEXQ03014 270 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 KRTAP1-1Q07627 177 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 DUSP8Q13202 625 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 TBR1Q16650 682 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 LARP4Q71RC2 724 aaKnown RBP eCLIP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 CXXC5Q7LFL8 322 aaKnown RBP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 PTRH1Q86Y79 214 aaKnown RBP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 ST13P5Q8NFI4 369 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-208ENST00000625916 FBXW5Q969U6 566 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 TLR9Q9NR96 1032 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 GALNT8Q9NY28 637 aa4.78□□□□□ -1.64
SCN1A-208ENST00000625916 A0A087X1B8 175 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 ADH4P08319 380 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 PDE6AP16499 860 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 INHBCP55103 352 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 ST5P78524 1137 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 FOXL1Q12952 345 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 TUBA3CQ13748 450 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 TUBA3EQ6PEY2 450 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 FILIP1Q7Z7B0 1213 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 SGMS1Q86VZ5 419 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 OSTM1Q86WC4 334 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 RTKN2Q8IZC4 609 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 CACTINQ8WUQ7 758 aaKnown RBP4.77□□□□□ -1.65
SCN1A-208ENST00000625916 TINF2Q9BSI4 451 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 MSL2Q9HCI7 577 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 PLA2G3Q9NZ20 509 aa4.77□□□□□ -1.65
SCN1A-208ENST00000625916 MAN2B1O00754 1011 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 KLF4O43474 513 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 PYGMP11217 842 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 MC4RP32245 332 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 MRE11P49959 708 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 PCOLCEQ15113 449 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 FIGNQ5HY92 759 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 MAMDC2Q7Z304 686 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-208ENST00000625916 OR14K1Q8NGZ2 314 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 CFHR4Q92496 578 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 CDC6Q99741 560 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 OR10A2Q9H208 303 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 NELFAQ9H3P2 528 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 MMRN2Q9H8L6 949 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 AURKAIP1Q9NWT8 199 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-208ENST00000625916 FAM184BQ9ULE4 1060 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 PCDHA8Q9Y5H6 950 aa4.76□□□□□ -1.65
SCN1A-208ENST00000625916 KCNK3O14649 394 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 GSTA4O15217 222 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 AMY2AP04746 511 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 SRGAP2CP0DJJ0 459 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 TCF3P15923 654 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 AMY2BP19961 511 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 MAKP20794 623 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 AOAHP28039 575 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 CD83Q01151 205 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 GUCY1A3Q02108 690 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 GRM7Q14831 915 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 EIF4HQ15056 248 aaKnown RBP4.75□□□□□ -1.65
SCN1A-208ENST00000625916 CRY1Q16526 586 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 C16orf59Q7L2K0 433 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 D2HGDHQ8N465 521 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 PCDH19Q8TAB3 1148 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 ZNF483Q8TF39 744 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-208ENST00000625916 PTPRN2Q92932 1015 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 TMEM176AQ96HP8 235 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 WNK4Q96J92 1243 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 IPO9Q96P70 1041 aaKnown RBP4.75□□□□□ -1.65
SCN1A-208ENST00000625916 SPATA9Q9BWV2 254 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 BTBD2Q9BX70 525 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 TRIM55Q9BYV6 548 aa4.75□□□□□ -1.65
SCN1A-208ENST00000625916 UCKL1Q9NWZ5 548 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms