RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 MSH4O15457 936 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 HBP1O60381 514 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 GJB5O95377 273 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 CTDNEP1O95476 244 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 CHRNA1P02708 482 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 AMHP03971 560 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 NEK4P51957 841 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 NONOQ15233 471 aaKnown RBP eCLIP16.77■□□□□ 0.28
LINC00643-205ENST00000623219 ME3Q16798 604 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 PDXDC2PQ6P474 469 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 KRT25Q7Z3Z0 450 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 ATP8B4Q8TF62 1192 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 WASF1Q92558 559 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 UIMC1Q96RL1 719 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 PCDHA2Q9Y5H9 948 aa16.77■□□□□ 0.28
LINC00643-205ENST00000623219 PRRC2BQ5JSZ5 2229 aaKnown RBP16.77■□□□□ 0.27
LINC00643-205ENST00000623219 XIRP2A4UGR9 3374 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 CYP3A7-CYP3A51PA0A087WV96 503 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 WDR64B1ANS9 1081 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 M0QZ92 97 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 GAS7O60861 476 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 LARGE1O95461 756 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 PSAPP07602 524 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 CYP3A7P24462 503 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 MRPS6P82932 125 aaKnown RBP16.76■□□□□ 0.27
LINC00643-205ENST00000623219 TAP1Q03518 808 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 Q4G0T1 1027 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 LRCH2Q5VUJ6 765 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 TMCO2Q7Z6W1 182 aaPredicted RBP16.76■□□□□ 0.27
LINC00643-205ENST00000623219 TRAPPC12Q8WVT3 735 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 SLC5A5Q92911 643 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 RIT2Q99578 217 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 ZBED2Q9BTP6 218 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 OSBPL7Q9BZF2 842 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 ORC3Q9UBD5 711 aaPredicted RBP16.76■□□□□ 0.27
LINC00643-205ENST00000623219 KCNJ14Q9UNX9 436 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 SAMM50Q9Y512 469 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 PCDHA10Q9Y5I2 948 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 MAFBQ9Y5Q3 323 aaPredicted RBP16.76■□□□□ 0.27
LINC00643-205ENST00000623219 CDY2AQ9Y6F7 541 aa16.76■□□□□ 0.27
LINC00643-205ENST00000623219 SMIM35A0A1B0GVV1 85 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 TDP2O95551 362 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 GHRP10912 638 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 SFNP31947 248 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 C8orf34Q49A92 452 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 ZNF484Q5JVG2 852 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 IER5Q5VY09 327 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 SWSAP1Q6NVH7 229 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 MTHFD1LQ6UB35 978 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.75■□□□□ 0.27
LINC00643-205ENST00000623219 TSHZ1Q6ZSZ6 1077 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.75■□□□□ 0.27
LINC00643-205ENST00000623219 CKAP2LQ8IYA6 745 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 MYOCDQ8IZQ8 938 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 BBXQ8WY36 941 aaPredicted RBP16.75■□□□□ 0.27
LINC00643-205ENST00000623219 ZBTB10Q96DT7 871 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 MBOAT7Q96N66 472 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 RAD9AQ99638 391 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 TEKT3Q9BXF9 490 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 FAM49AQ9H0Q0 323 aaPredicted RBP16.75■□□□□ 0.27
LINC00643-205ENST00000623219 TRPV2Q9Y5S1 764 aa16.75■□□□□ 0.27
LINC00643-205ENST00000623219 PLXNA4Q9HCM2 1894 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 CCDC194A0A1B0GVG4 234 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 LCHNA4D1U4 455 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 ARHGEF15O94989 841 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 ATP4AP20648 1035 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 JAK3P52333 1124 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 ADGRE1Q14246 886 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 LPIN1Q14693 890 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 INF2Q27J81 1249 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 FBXO47Q5MNV8 452 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 NECAB1Q8N987 351 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 NSUN7Q8NE18 718 aaKnown RBP16.74■□□□□ 0.27
LINC00643-205ENST00000623219 FAM167AQ96KS9 214 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 GABBR1Q9UBS5 961 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 CEP131Q9UPN4 1083 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 INSL6Q9Y581 213 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 SQORQ9Y6N5 450 aa16.74■□□□□ 0.27
LINC00643-205ENST00000623219 KDM3AQ9Y4C1 1321 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.73■□□□□ 0.27
LINC00643-205ENST00000623219 ZBTB42B2RXF5 422 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 RBAK-RBAKDNI3L0D1 243 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 PSMD10O75832 226 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 GCFC2P16383 781 aaKnown RBP16.73■□□□□ 0.27
LINC00643-205ENST00000623219 KLRC1P26715 233 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 HTRA4P83105 476 aaPredicted RBP16.73■□□□□ 0.27
LINC00643-205ENST00000623219 NEK8Q86SG6 692 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 NME8Q8N427 588 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 USP38Q8NB14 1042 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 RDM1Q8NG50 284 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 ETNPPLQ8TBG4 499 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 UNC45AQ9H3U1 944 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 DISC1Q9NRI5 854 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 GJB4Q9NTQ9 266 aa16.73■□□□□ 0.27
LINC00643-205ENST00000623219 DDX25Q9UHL0 483 aaKnown RBP16.73■□□□□ 0.27
LINC00643-205ENST00000623219 CHMP2AO43633 222 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 C22orf31O95567 290 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 FDPSP14324 419 aaKnown RBP16.72■□□□□ 0.27
LINC00643-205ENST00000623219 IGFBP4P22692 258 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 LETM2Q2VYF4 491 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms