RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ARGLU1Q9NWB6 273 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 SALL4Q9UJQ4 1053 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 BUB1O43683 1085 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 SASH3O75995 380 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 FAM13AO94988 1023 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 PNMA6AP0CW24 399 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 CXCR5P32302 372 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 GMPSP49915 693 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 DNA2P51530 1060 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 PRELPP51888 382 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 SPP2Q13103 211 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 PRKG1Q13976 671 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 PDXDC1Q6P996 788 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 FAM133AQ8N9E0 248 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 RABGGTAQ92696 567 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 SLC5A5Q92911 643 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 CEP63Q96MT8 703 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 MMS19Q96T76 1030 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 LXNQ9BS40 222 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 POLR3CQ9BUI4 534 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.7□□□□□ -0.544e-6■■■■□ 23.2
CUX1-221ENST00000622516 DEFB129Q9H1M3 183 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 SUGCTQ9HAC7 445 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 KCNH7Q9NS40 1196 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 HACL1Q9UJ83 578 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 COL2A1P02458 1487 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 MYCLP12524 364 aaPredicted RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 VAV2P52735 878 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 MRPS25P82663 173 aaKnown RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 UTP14CQ5TAP6 766 aaKnown RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 FKBP1CQ5VVH2 108 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 HGSNATQ68CP4 663 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 FAM160B2Q86V87 743 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 CEP112Q8N8E3 955 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 RDH13Q8NBN7 331 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 MTMR14Q8NCE2 650 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 SH2D4AQ9H788 454 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 MYO1AQ9UBC5 1043 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 ARMCX3Q9UH62 379 aaPredicted RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 ASTN1O14525 1302 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 CTAGE15A4D2H0 777 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 NR3C1P04150 777 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 ICAM1P05362 532 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 CTAGE8P0CG41 777 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 NAP1L1P55209 391 aaKnown RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 CC2D1AQ6P1N0 951 aaPredicted RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 GJB7Q6PEY0 223 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 DLK2Q6UY11 383 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 C1orf186Q6ZWK4 172 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 EPM2AIP1Q7L775 607 aaPredicted RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 CTAGE6Q86UF2 777 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 CTAGE4Q8IX94 777 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 PRPF38AQ8NAV1 312 aaKnown RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 CLEC4DQ8WXI8 215 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 CNOT7Q9UIV1 285 aaKnown RBP11.69□□□□□ -0.54
CUX1-221ENST00000622516 SAR1BQ9Y6B6 198 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 PSME4Q14997 1843 aa11.69□□□□□ -0.54
CUX1-221ENST00000622516 NCK2O43639 380 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 SORBS3O60504 671 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 ZRANB2O95218 330 aaKnown RBP eCLIP11.68□□□□□ -0.54
CUX1-221ENST00000622516 KIF20AO95235 890 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 HNRNPH3P31942 346 aaKnown RBP11.68□□□□□ -0.54
CUX1-221ENST00000622516 MAGEA1P43355 309 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 PPP2R5CQ13362 524 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 NSMFQ6X4W1 530 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 TRAPPC11Q7Z392 1133 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 TAAR1Q96RJ0 339 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 SMARCAL1Q9NZC9 954 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 ADAMTS1Q9UHI8 967 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 SYNPO2Q9UMS6 1093 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 TGFB1I1O43294 461 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 ZMYND10O75800 440 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 DMTNQ08495 405 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 SFMBT2Q5VUG0 894 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 KRT222Q8N1A0 295 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 MXRA8Q9BRK3 442 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 RIPK3Q9Y572 518 aa11.68□□□□□ -0.54
CUX1-221ENST00000622516 TISP43B9A030 160 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 XRCC5P13010 732 aaKnown RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 VCAM1P19320 739 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 CYP2J2P51589 502 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 RPS6P62753 249 aaKnown RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 MRPS9P82933 396 aaKnown RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 PTPROQ16827 1216 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 EDRF1Q3B7T1 1238 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 ODR4Q5SWX8 454 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 EHD2Q9NZN4 543 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 TRAF3IP3Q9Y228 551 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 PDE2AO00408 941 aaPredicted RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 TBC1D8O95759 1140 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 GNA14O95837 355 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 PLA2G4AP47712 749 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 CDK17Q00537 523 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 ITGB3BPQ13352 177 aaPredicted RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 BMS1Q14692 1282 aaKnown RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 TEKT3Q9BXF9 490 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 PACSIN1Q9BY11 444 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 RPAP3Q9H6T3 665 aaPredicted RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 PARVGQ9HBI0 331 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 CEP72Q9P209 647 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms