RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ZSWIM2Q8NEG5 633 aa7.59□□□□□ -1.19
VPS29-212ENST00000621131 MAGEB10Q96LZ2 347 aaPredicted RBP7.59□□□□□ -1.19
VPS29-212ENST00000621131 MEGF9Q9H1U4 602 aa7.59□□□□□ -1.19
VPS29-212ENST00000621131 BTBD7Q9P203 1132 aa7.59□□□□□ -1.19
VPS29-212ENST00000621131 ARHGAP28Q9P2N2 729 aa7.59□□□□□ -1.19
VPS29-212ENST00000621131 SLC4A7Q9Y6M7 1214 aa7.59□□□□□ -1.19
VPS29-212ENST00000621131 MROH2BQ7Z745 1585 aa7.59□□□□□ -1.2
VPS29-212ENST00000621131 POLD1P28340 1107 aa7.58□□□□□ -1.2
VPS29-212ENST00000621131 HERVK_113P62684 666 aa7.58□□□□□ -1.2
VPS29-212ENST00000621131 TOP3AQ13472 1001 aaPredicted RBP7.58□□□□□ -1.2
VPS29-212ENST00000621131 PUM1Q14671 1186 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS29-212ENST00000621131 EP400NLQ6ZTU2 488 aa7.58□□□□□ -1.2
VPS29-212ENST00000621131 CIR1Q86X95 450 aaPredicted RBP7.58□□□□□ -1.2
VPS29-212ENST00000621131 MRPL4Q9BYD3 311 aaKnown RBP7.58□□□□□ -1.2
VPS29-212ENST00000621131 JADE2Q9NQC1 790 aa7.58□□□□□ -1.2
VPS29-212ENST00000621131 COQ6Q9Y2Z9 468 aa7.58□□□□□ -1.2
VPS29-212ENST00000621131 PTGS1P23219 599 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 AOAHP28039 575 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 C2orf27AQ580R0 203 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 OVCH1Q7RTY7 1134 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 GPR155Q7Z3F1 870 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 NOSTRINQ8IVI9 506 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 DVL3Q92997 716 aaPredicted RBP7.57□□□□□ -1.2
VPS29-212ENST00000621131 CELF4Q9BZC1 486 aaKnown RBP7.57□□□□□ -1.2
VPS29-212ENST00000621131 SEC61A2Q9H9S3 476 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 GALNT8Q9NY28 637 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 PTPN22Q9Y2R2 807 aa7.57□□□□□ -1.2
VPS29-212ENST00000621131 TCRBV16S1A1N1A0A5B0 115 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 ESYT3A0FGR9 886 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 PATE3B3GLJ2 98 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 MPIG6BO95866 241 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 ZNF888P0CJ79 500 aaPredicted RBP7.56□□□□□ -1.2
VPS29-212ENST00000621131 USP10Q14694 798 aaKnown RBP7.56□□□□□ -1.2
VPS29-212ENST00000621131 CDSNQ15517 529 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 FGD2Q7Z6J4 655 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 CISD2Q8N5K1 135 aaKnown RBP7.56□□□□□ -1.2
VPS29-212ENST00000621131 WNK4Q96J92 1243 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 WWC2-AS2Q96NR7 200 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 AMNQ9BXJ7 453 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 CARD11Q9BXL7 1154 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 INCENPQ9NQS7 918 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 PTCH2Q9Y6C5 1203 aa7.56□□□□□ -1.2
VPS29-212ENST00000621131 WIZO95785 1651 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 PRAMEF25A6NGN4 478 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 CUTAO60888 179 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 MC4RP32245 332 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 IL13RA1P78552 427 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 STILQ15468 1287 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 TM4SF20Q53R12 229 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 FSTL4Q6MZW2 842 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 ABHD17CQ6PCB6 329 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 CXXC5Q7LFL8 322 aaKnown RBP7.55□□□□□ -1.2
VPS29-212ENST00000621131 BRAPQ7Z569 592 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 DLG3Q92796 817 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 DNAJC2Q99543 621 aaKnown RBP7.55□□□□□ -1.2
VPS29-212ENST00000621131 OSBPL2Q9H1P3 480 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 TRIM39Q9HCM9 518 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 SFMBT1Q9UHJ3 866 aa7.55□□□□□ -1.2
VPS29-212ENST00000621131 SCDO00767 359 aa7.54□□□□□ -1.2
VPS29-212ENST00000621131 BTBD2Q9BX70 525 aa7.54□□□□□ -1.2
VPS29-212ENST00000621131 KLC2Q9H0B6 622 aa7.54□□□□□ -1.2
VPS29-212ENST00000621131 NCOA5Q9HCD5 579 aaKnown RBP7.54□□□□□ -1.2
VPS29-212ENST00000621131 MATN3O15232 486 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 NPTXRO95502 500 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 TNFRSF1AP19438 455 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 WDR72Q3MJ13 1102 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 Q8TCH9 128 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 GNRHR2Q96P88 292 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 ZDHHC5Q9C0B5 715 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 UCKL1Q9NWZ5 548 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 CDK11AQ9UQ88 783 aaPredicted RBP7.53□□□□□ -1.2
VPS29-212ENST00000621131 TSC22D4Q9Y3Q8 395 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 B3GALT1Q9Y5Z6 326 aa7.53□□□□□ -1.2
VPS29-212ENST00000621131 TOP2AP11388 1531 aaKnown RBP7.52□□□□□ -1.2
VPS29-212ENST00000621131 RASSF10A6NK89 507 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 ZNF623O75123 536 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 MMEP08473 750 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 ZBTB48P10074 688 aaPredicted RBP7.52□□□□□ -1.21
VPS29-212ENST00000621131 ECE1P42892 770 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 LRSAM1Q6UWE0 723 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 IFNL2Q8IZJ0 200 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 IGSF22Q8N9C0 903 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 SREK1Q8WXA9 508 aaKnown RBP7.52□□□□□ -1.21
VPS29-212ENST00000621131 ASB15Q8WXK1 588 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 CLUHP3Q96NS8 147 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 LMF1Q96S06 567 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 KCNH7Q9NS40 1196 aa7.52□□□□□ -1.21
VPS29-212ENST00000621131 NCAPD3P42695 1498 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 SLC12A8A0AV02 714 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 PLD2O14939 933 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 APPP05067 770 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 SDHAP31040 664 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 ETV4P43268 484 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 KANK2Q63ZY3 851 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 TCTN3Q6NUS6 607 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 ZNF585AQ6P3V2 769 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 NEIL1Q96FI4 390 aaPredicted RBP7.51□□□□□ -1.21
VPS29-212ENST00000621131 SCYL1Q96KG9 808 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 DEF6Q9H4E7 631 aa7.51□□□□□ -1.21
VPS29-212ENST00000621131 NESP48681 1621 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms