RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 NUP98P52948 1817 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 PPP1R3GB7ZBB8 358 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 UBOX5O94941 541 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 PAFAH1B1P43034 410 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 COPS2P61201 443 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 USP46P62068 366 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 SULT2A1Q06520 285 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 TMEM132AQ24JP5 1023 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 ODF2Q5BJF6 829 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 ZNF365Q70YC5 407 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.28□□□□□ -0.6
VPS11-207ENST00000620429 ARL10Q8N8L6 244 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 PPP2R3CQ969Q6 453 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 SYT17Q9BSW7 474 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 CTTNBP2NLQ9P2B4 639 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 TSKSQ9UJT2 592 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 ITGB1BP2Q9UKP3 347 aa11.28□□□□□ -0.6
VPS11-207ENST00000620429 IQSEC3Q9UPP2 1182 aaPredicted RBP11.28□□□□□ -0.6
VPS11-207ENST00000620429 WTIPA6NIX2 430 aaPredicted RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 TRIM75PA6NK02 468 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 HEXIM1O94992 359 aaKnown RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 DEXIO95424 95 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 MATR3P43243 847 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS11-207ENST00000620429 GUCY2FP51841 1108 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 FKBP15Q5T1M5 1219 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 CEP128Q6ZU80 1094 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 LRRC43Q8N309 656 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 SPIRE2Q8WWL2 714 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 PBKQ96KB5 322 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 GSDMAQ96QA5 445 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 NAPBQ9H115 298 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 TAB2Q9NYJ8 693 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 SAMD15Q9P1V8 674 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 TFR2Q9UP52 801 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 NIP7Q9Y221 180 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS11-207ENST00000620429 RCCD1A6NED2 376 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 PDE6AP16499 860 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 CYLC1P35663 651 aaPredicted RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 HSD17B3P37058 310 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 DPYDQ12882 1025 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 LSAMPQ13449 338 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 TTF1Q15361 905 aaPredicted RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 UBE3CQ15386 1083 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 RBM26Q5T8P6 1007 aaKnown RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 NCCRP1Q6ZVX7 275 aaPredicted RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 SLF2Q8IX21 1173 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 CFAP61Q8NHU2 1237 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 ATP8B4Q8TF62 1192 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 TEKT1Q969V4 418 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 MPHOSPH6Q99547 160 aaKnown RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 OXCT2Q9BYC2 517 aaPredicted RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 CARD9Q9H257 536 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 RBM12Q9NTZ6 932 aaKnown RBP11.27□□□□□ -0.61
VPS11-207ENST00000620429 ABCF3Q9NUQ8 709 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 RNF14Q9UBS8 474 aa11.27□□□□□ -0.61
VPS11-207ENST00000620429 FAM205CA6NFA0 338 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 PRPF3O43395 683 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 GFPT2O94808 682 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 GUCY2DQ02846 1103 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 MEA1Q16626 185 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 RRAGBQ5VZM2 374 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 WDR59Q6PJI9 974 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 ENDOVQ8N8Q3 282 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 STKLD1Q8NE28 680 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 WDR66Q8TBY9 1149 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 ASAP3Q8TDY4 903 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 STK32AQ8WU08 396 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 CASKIN2Q8WXE0 1202 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 DNAJC9Q8WXX5 260 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 IFT81Q8WYA0 676 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 SYMPKQ92797 1274 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 ZNF653Q96CK0 615 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 STRBPQ96SI9 672 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 RMND1Q9NWS8 449 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 PDP2Q9P2J9 529 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 NKX1-2Q9UD57 310 aaPredicted RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 ATP8A1Q9Y2Q0 1164 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 COMMD3-BMI1R4GMX3 469 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 CTNND1O60716 968 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 TACC1O75410 805 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 TPBGLP0DKB5 382 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 FGFR2P21802 821 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 COPB1P53618 953 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 RAD23BP54727 409 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 SPAG1Q07617 926 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 MCL1Q07820 350 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 WTAPQ15007 396 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 PKN1Q16512 942 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 USH1GQ495M9 461 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 SH3RF1Q7Z6J0 888 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 CRACR2BQ8N4Y2 399 aaPredicted RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 ZNF784Q8NCA9 323 aaPredicted RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 LRRC45Q96CN5 670 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 CCDC28BQ9BUN5 200 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 CCDC134Q9H6E4 229 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 DDX25Q9UHL0 483 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 ZMYND8Q9ULU4 1186 aaPredicted RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 NOVA2Q9UNW9 492 aaKnown RBP11.26□□□□□ -0.61
VPS11-207ENST00000620429 LRCH1Q9Y2L9 728 aa11.26□□□□□ -0.61
VPS11-207ENST00000620429 SH3GLB1Q9Y371 365 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms