RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 CCDC169A6NNP5 214 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 SEPT2Q15019 361 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 ZNF473Q8WTR7 871 aaKnown RBP13.65□□□□□ -0.22
MSH6-213ENST00000614496 CCDC127Q96BQ5 260 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 TRIM51Q9BSJ1 452 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 SEMA3FQ13275 785 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 NAA25Q14CX7 972 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 KNOP1Q1ED39 458 aaKnown RBP13.65□□□□□ -0.22
MSH6-213ENST00000614496 SPATS2Q86XZ4 545 aaKnown RBP13.65□□□□□ -0.22
MSH6-213ENST00000614496 MXD3Q9BW11 206 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 DHX36Q9H2U1 1008 aaKnown RBP13.65□□□□□ -0.22
MSH6-213ENST00000614496 LMTK3Q96Q04 1460 aa13.65□□□□□ -0.22
MSH6-213ENST00000614496 TRIM49P0CI25 452 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 TRIM49CP0CI26 452 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 UCHL3P15374 230 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 MDH1P40925 334 aaKnown RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 HDLBPQ00341 1268 aaKnown RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 PHLDB2Q86SQ0 1253 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 PPM1KQ8N3J5 372 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 ANKS1AQ92625 1134 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 PLVAPQ9BX97 442 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 RGL1Q9NZL6 768 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 DNAJC12Q9UKB3 198 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 LAMA4Q16363 1823 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 hCG_1984214I3L0E3 225 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 SERPINB2P05120 415 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 BCRP11274 1271 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 PSMC2P35998 433 aaKnown RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 CUL1Q13616 776 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 TMEM132AQ24JP5 1023 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 ZNF746Q6NUN9 644 aaPredicted RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 C16orf86Q6ZW13 317 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 ZNF713Q8N859 430 aaPredicted RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 TCP11Q8WWU5 503 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 EDEM3Q9BZQ6 932 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 UBXN6Q9BZV1 441 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 VEZTQ9HBM0 779 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 SIK3Q9Y2K2 1263 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 FRMD3A2A2Y4 597 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 MEFVO15553 781 aaPredicted RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 ARHGAP4P98171 946 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 DR1Q01658 176 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 SNX1Q13596 522 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 USP38Q8NB14 1042 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 JMJD4Q9H9V9 463 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 FAM114A2Q9NRY5 505 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 INTS9Q9NV88 658 aaKnown RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 NKRFO15226 690 aaKnown RBP eCLIP13.64□□□□□ -0.23
MSH6-213ENST00000614496 MYBP10242 640 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 CETN2P41208 172 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 CDK17Q00537 523 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 TRADDQ15628 312 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 LRCH2Q5VUJ6 765 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 CPXCR1Q8N123 301 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.64□□□□□ -0.237e-7■■□□□ 13.6
MSH6-213ENST00000614496 STMN4Q9H169 189 aaPredicted RBP13.64□□□□□ -0.23
MSH6-213ENST00000614496 DBNDD1Q9H9R9 158 aa13.64□□□□□ -0.23
MSH6-213ENST00000614496 ANKRD62A6NC57 917 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 GMNCA6NCL1 334 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 K7ENM7 598 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 RPSAP08865 295 aaKnown RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 FXR2P51116 673 aaKnown RBP eCLIP13.63□□□□□ -0.234e-7■■■■■ 30.4
MSH6-213ENST00000614496 RBM26Q5T8P6 1007 aaKnown RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 OTUD6AQ7L8S5 288 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 EPN3Q9H201 632 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 TMOD4Q9NZQ9 345 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 STK38LQ9Y2H1 464 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 LMNB1P20700 586 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 MYL7Q01449 175 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 FAM133BQ5BKY9 247 aaKnown RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 MMTAG2Q9BU76 263 aaKnown RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 HOMER2Q9NSB8 354 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 CHORDC1Q9UHD1 332 aaPredicted RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 PLEKHG2Q9H7P9 1386 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 SCN11AQ9UI33 1791 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 GRID2IPA4D2P6 1211 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 NMT1P30419 496 aaKnown RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 PLCB3Q01970 1234 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 ZNF543Q08ER8 600 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 ZKSCAN8Q15776 578 aaPredicted RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 TTMPQ5BVD1 217 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 TACO1Q9BSH4 297 aaKnown RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 UBE2TQ9NPD8 197 aaPredicted RBP13.63□□□□□ -0.23
MSH6-213ENST00000614496 SALL4Q9UJQ4 1053 aa13.63□□□□□ -0.23
MSH6-213ENST00000614496 DRAP1Q14919 205 aaPredicted RBP13.62□□□□□ -0.23
MSH6-213ENST00000614496 SLC30A10Q6XR72 485 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 HOOK2Q96ED9 719 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 MYCBPQ99417 103 aaPredicted RBP13.62□□□□□ -0.23
MSH6-213ENST00000614496 MLXIPLQ9NP71 852 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 USTQ9Y2C2 406 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 PHF20L1A8MW92 1017 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 CCDC188H7C350 402 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 POTEJP0CG39 1038 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 PRLRP16471 622 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 C10orf76Q5T2E6 689 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 HIBCHQ6NVY1 386 aaPredicted RBP13.62□□□□□ -0.23
MSH6-213ENST00000614496 REEP2Q9BRK0 252 aa13.62□□□□□ -0.23
MSH6-213ENST00000614496 MYH2Q9UKX2 1941 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms