RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PMS1P54277 932 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PSMB7Q99436 277 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 SLC38A10Q9HBR0 1119 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PKD2L2Q9NZM6 624 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 APOBEC2Q9Y235 224 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ZDHHC9Q9Y397 364 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PITPNM2Q9BZ72 1349 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 MLH3Q9UHC1 1453 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ARHGEF10O15013 1369 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PYGBP11216 843 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ACADVLP49748 655 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 RRAGAQ7L523 313 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 STK32AQ8WU08 396 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 B3GALT6Q96L58 329 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 EPAS1Q99814 870 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CCDC194A0A1B0GVG4 234 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 SASH3O75995 380 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 UBTFL6P0CB48 400 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 RECQLP46063 649 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CAV1Q03135 178 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 GPR141Q7Z602 305 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CSGALNACT2Q8N6G5 542 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 COX4I2Q96KJ9 171 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 LDHAP00338 332 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CCSAPQ6IQ19 270 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ELMSAN1Q6PJG2 1045 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TTC6Q86TZ1 520 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CHCHD4Q8N4Q1 142 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TUBGCP5Q96RT8 1024 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 HNRNPRO43390 633 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 MCL1Q07820 350 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TMEM63BQ5T3F8 832 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 POTEAQ6S8J7 498 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TOR1AIP2Q8NFQ8 470 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 GABPB2Q8TAK5 448 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PIH1D3Q9NQM4 214 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 STX18Q9P2W9 335 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 DNAJC12Q9UKB3 198 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TLK1Q9UKI8 766 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PCDHA7Q9UN72 937 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 NOTOA8MTQ0 251 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ZBTB7BO15156 539 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 DTNBO60941 627 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 NLRP4Q96MN2 994 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 VPS16Q9H269 839 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TAB2Q9NYJ8 693 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ARHGAP26Q9UNA1 814 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 SSX2IPQ9Y2D8 614 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PALM3A6NDB9 673 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 SNTNA6NMZ2 147 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CYP2E1P05181 493 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TRMT5Q32P41 509 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 FAM153AQ9UHL3 310 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PCDHA13Q9Y5I0 950 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 IQGAP3Q86VI3 1631 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PRR23AA6NEV1 266 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 TTI1O43156 1089 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 RPL13P26373 211 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 COPB1P53618 953 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 STK4Q13043 487 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ATG16L1Q676U5 607 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 PRR23BQ6ZRT6 265 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 DDX42Q86XP3 938 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 CDC5LQ99459 802 aaKnown RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ZNF184Q99676 751 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-213ENST00000613099 SLC39A3Q9BRY0 314 aa5.31□□□□□ -1.56
VPS13D-213ENST00000613099 ZBTB43O43298 467 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PRPF6O94906 941 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CD2BP2O95400 341 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PTGS2P35354 604 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MCMDC2Q4G0Z9 681 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 TGS1Q96RS0 853 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ZKSCAN3Q9BRR0 538 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CCDC88AQ3V6T2 1871 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 EIF4E1BA6NMX2 242 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CALML3P27482 149 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RFC5P40937 340 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RUNDC3AQ59EK9 446 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RNPEPL1Q9HAU8 725 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 TRPC5Q9UL62 973 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 COPG1Q9Y678 874 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ENC1O14682 589 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CCZ1BP86790 482 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CCZ1P86791 482 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 EPM2AIP1Q7L775 607 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 TLK2Q86UE8 772 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 GIPC3Q8TF64 312 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 NSL1Q96IY1 281 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MYOM2P54296 1465 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 UBE4BO95155 1302 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 LTN1O94822 1766 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 C2orf54Q08AI8 447 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 NMD3Q96D46 503 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RMDN1Q96DB5 314 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RNPC3Q96LT9 517 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 NSFL1CQ9UNZ2 370 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PSMD14O00487 310 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 TPPPO94811 219 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MT-ND3P03897 115 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ATAD3BQ5T9A4 648 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms