RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SASH1O94885 1247 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 VPS41P49754 854 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 EFNA5P52803 228 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 ST8SIA6P61647 398 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 SNX17Q15036 470 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 IFT43Q96FT9 208 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 CRAMP1Q96RY5 1269 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 GINM1Q9NU53 330 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 ASNSD1Q9NWL6 643 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 IKBKBO14920 756 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 OSTNP61366 133 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 IL9RQ01113 521 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 FAM173BQ6P4H8 233 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 CENPKQ9BS16 269 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 OLFML3Q9NRN5 406 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 OGFRQ9NZT2 677 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 SH2B2O14492 632 aaPredicted RBP22.01■■□□□ 1.11
UPF1-207ENST00000599848 ECEL1O95672 775 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 GPC3P51654 580 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 SPP2Q13103 211 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 PSMB7Q99436 277 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 MRPL4Q9BYD3 311 aaKnown RBP22.01■■□□□ 1.11
UPF1-207ENST00000599848 SMYD2Q9NRG4 433 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 RPLP2P05387 115 aaKnown RBP22.01■■□□□ 1.11
UPF1-207ENST00000599848 CALB1P05937 261 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 CPB1P15086 417 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 LPAR1Q92633 364 aa22.01■■□□□ 1.11
UPF1-207ENST00000599848 MAGOHBQ96A72 148 aaKnown RBP22.01■■□□□ 1.11
UPF1-207ENST00000599848 TSPYL2Q9H2G4 693 aaPredicted RBP22.01■■□□□ 1.11
UPF1-207ENST00000599848 TDRD3Q9H7E2 651 aaKnown RBP22.01■■□□□ 1.11
UPF1-207ENST00000599848 SLC4A1P02730 911 aa22■■□□□ 1.11
UPF1-207ENST00000599848 CETPP11597 493 aa22■■□□□ 1.11
UPF1-207ENST00000599848 MSH2P43246 934 aa22■■□□□ 1.11
UPF1-207ENST00000599848 TAF1BQ53T94 588 aaPredicted RBP22■■□□□ 1.11
UPF1-207ENST00000599848 RWDD4Q6NW29 188 aaKnown RBP22■■□□□ 1.11
UPF1-207ENST00000599848 GIPC2Q8TF65 315 aa22■■□□□ 1.11
UPF1-207ENST00000599848 XPO4Q9C0E2 1151 aaKnown RBP22■■□□□ 1.11
UPF1-207ENST00000599848 SUCLA2Q9P2R7 463 aaPredicted RBP22■■□□□ 1.11
UPF1-207ENST00000599848 PCDHA6Q9UN73 950 aa22■■□□□ 1.11
UPF1-207ENST00000599848 PCDHA8Q9Y5H6 950 aa22■■□□□ 1.11
UPF1-207ENST00000599848 MMP1P03956 469 aa22■■□□□ 1.11
UPF1-207ENST00000599848 SLFN14P0C7P3 912 aa22■■□□□ 1.11
UPF1-207ENST00000599848 ZNF853P0CG23 659 aa22■■□□□ 1.11
UPF1-207ENST00000599848 SGO2Q562F6 1265 aa22■■□□□ 1.11
UPF1-207ENST00000599848 DRC3Q9H069 523 aa22■■□□□ 1.11
UPF1-207ENST00000599848 A0A1B0GUA9 196 aa22■■□□□ 1.11
UPF1-207ENST00000599848 BRD1O95696 1058 aa22■■□□□ 1.11
UPF1-207ENST00000599848 THNSL1Q8IYQ7 743 aa22■■□□□ 1.11
UPF1-207ENST00000599848 GCNT4Q9P109 453 aa22■■□□□ 1.11
UPF1-207ENST00000599848 VPS72Q15906 364 aa22■■□□□ 1.11
UPF1-207ENST00000599848 LARP7Q4G0J3 582 aaKnown RBP eCLIP22■■□□□ 1.11
UPF1-207ENST00000599848 SPATA33Q96N06 139 aa22■■□□□ 1.11
UPF1-207ENST00000599848 KIF2CQ99661 725 aa22■■□□□ 1.11
UPF1-207ENST00000599848 TIPINQ9BVW5 301 aa22■■□□□ 1.11
UPF1-207ENST00000599848 THAP9Q9H5L6 903 aa22■■□□□ 1.11
UPF1-207ENST00000599848 UBE2TQ9NPD8 197 aaPredicted RBP22■■□□□ 1.11
UPF1-207ENST00000599848 MROH7-TTC4A0A0A0MT08 1334 aa22■■□□□ 1.11
UPF1-207ENST00000599848 H7C1W4 665 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 GSTA4O15217 222 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 CCNE1P24864 410 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 INPP1P49441 399 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 EPN1Q9Y6I3 576 aaPredicted RBP21.99■■□□□ 1.11
UPF1-207ENST00000599848 SLC25A27O95847 323 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 BTBD8Q5XKL5 378 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 SDE2Q6IQ49 451 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 RHOT2Q8IXI1 618 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 TRIM54Q9BYV2 358 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 OLA1Q9NTK5 396 aaKnown RBP21.99■■□□□ 1.11
UPF1-207ENST00000599848 GOLGA8MH3BSY2 632 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 P4HBP07237 508 aaKnown RBP21.99■■□□□ 1.11
UPF1-207ENST00000599848 PBKQ96KB5 322 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 RAVER2Q9HCJ3 691 aaKnown RBP21.99■■□□□ 1.11
UPF1-207ENST00000599848 ROBO2Q9HCK4 1378 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 PTH1RQ03431 593 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 ASIC4Q96FT7 647 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 PCIF1Q9H4Z3 704 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 ZNF699Q32M78 642 aa21.99■■□□□ 1.11
UPF1-207ENST00000599848 TTC31Q49AM3 519 aaPredicted RBP21.99■■□□□ 1.11
UPF1-207ENST00000599848 NOP14P78316 857 aaKnown RBP21.98■■□□□ 1.11
UPF1-207ENST00000599848 LONRF3Q496Y0 759 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 TNIP3Q96KP6 325 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 CD58P19256 250 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 INPP5BP32019 993 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 FRA10AC1Q70Z53 315 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 KLC2Q9H0B6 622 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 PYGLP06737 847 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 RASGRF1Q13972 1273 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 FGD4Q96M96 766 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 PCDHA7Q9UN72 937 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 DIS3Q9Y2L1 958 aaKnown RBP21.98■■□□□ 1.11
UPF1-207ENST00000599848 RGS12O14924 1447 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 TXNDC9O14530 226 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 KDM1AO60341 852 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 PEX3P56589 373 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 IER5Q5VY09 327 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 PCGF5Q86SE9 256 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 OR6J1Q8NGC5 347 aa21.98■■□□□ 1.11
UPF1-207ENST00000599848 RBM41Q96IZ5 413 aaKnown RBP21.98■■□□□ 1.11
UPF1-207ENST00000599848 PSMC5P62195 406 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 EN1Q05925 392 aaPredicted RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms