RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZMYM2Q9UBW7 1377 aa15.96■□□□□ 0.14
VRK3-217ENST00000599538 TMEM150BA6NC51 233 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 CETN3O15182 167 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 AKAP3O75969 853 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 FAM13AO94988 1023 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 MTMR1Q13613 665 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 BAATQ14032 418 aaPredicted RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 BMT2Q1RMZ1 405 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 TRMT1LQ7Z2T5 733 aaKnown RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 MIER3Q7Z3K6 550 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 ZNF397Q8NF99 534 aaPredicted RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 PDCD2LQ9BRP1 358 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 NLRC4Q9NPP4 1024 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 OLFML3Q9NRN5 406 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 RNF146Q9NTX7 359 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 ZNHIT6Q9NWK9 470 aaKnown RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 TADA3O75528 432 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 DDNO94850 711 aaPredicted RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 HNRNPH3P31942 346 aaKnown RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 KCNH2Q12809 1159 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 COG2Q14746 738 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 PPP4R3CPQ6ZMV5 832 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 MAEAQ7L5Y9 396 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 DAW1Q8N136 415 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 EPC1Q9H2F5 836 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 PXMP2Q9NR77 195 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 ZNF214Q9UL59 606 aaPredicted RBP15.95■□□□□ 0.14
VRK3-217ENST00000599538 DUSP10Q9Y6W6 482 aa15.95■□□□□ 0.14
VRK3-217ENST00000599538 PDXKO00764 312 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 PEX10O60683 326 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 GNA14O95837 355 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 MAPK7Q13164 816 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 TMEM132BQ14DG7 1078 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 UGCGQ16739 394 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 SNRNP48Q6IEG0 339 aaKnown RBP15.94■□□□□ 0.14
VRK3-217ENST00000599538 GPC2Q8N158 579 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 KCTD17Q8N5Z5 321 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 NEK11Q8NG66 645 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 LSM14BQ9BX40 385 aaKnown RBP15.94■□□□□ 0.14
VRK3-217ENST00000599538 PARVGQ9HBI0 331 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 AS3MTQ9HBK9 375 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 TYW1Q9NV66 732 aaKnown RBP15.94■□□□□ 0.14
VRK3-217ENST00000599538 SAMM50Q9Y512 469 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 NR3C1P04150 777 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 DSG3P32926 999 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 FBXO38Q6PIJ6 1188 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 NIPA1Q7RTP0 329 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 MNS1Q8NEH6 495 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 MAP7D2Q96T17 732 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 MYH11P35749 1972 aa15.94■□□□□ 0.14
VRK3-217ENST00000599538 TESPA1A2RU30 521 aaPredicted RBP15.93■□□□□ 0.14
VRK3-217ENST00000599538 EIF3CLB5ME19 914 aaKnown RBP15.93■□□□□ 0.14
VRK3-217ENST00000599538 GAP43P17677 238 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 LMNB1P20700 586 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 MUTP22033 750 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 CYLC1P35663 651 aaPredicted RBP15.93■□□□□ 0.14
VRK3-217ENST00000599538 EIF4A3P38919 411 aaKnown RBP15.93■□□□□ 0.14
VRK3-217ENST00000599538 ZNF131P52739 623 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 CDK17Q00537 523 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 PPP2R3AQ06190 1150 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 CCDC122Q5T0U0 273 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 ARHGEF16Q5VV41 709 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 PDXDC1Q6P996 788 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 ZNF720Q7Z2F6 126 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 C12orf42Q96LP6 360 aa15.93■□□□□ 0.14
VRK3-217ENST00000599538 EIF3CQ99613 913 aaKnown RBP15.93■□□□□ 0.14
VRK3-217ENST00000599538 ARHGEF35A5YM69 484 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 CALUO43852 315 aaPredicted RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 TLR2O60603 784 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 HIP1RO75146 1068 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 CCNE2O96020 404 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 P4HBP07237 508 aaKnown RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 ACTN1P12814 892 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 POLR2FP61218 127 aaKnown RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 ODR4Q5SWX8 454 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 CACNA2D4Q7Z3S7 1137 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 MTERF4Q7Z6M4 381 aaKnown RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 CCDC170Q8IYT3 715 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 CNKSR2Q8WXI2 1034 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 UPF1Q92900 1129 aaKnown RBP eCLIP15.92■□□□□ 0.14
VRK3-217ENST00000599538 CCDC42Q96M95 316 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 ZSWIM4Q9H7M6 989 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 MAP3K20Q9NYL2 800 aaKnown RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 ADAMTS5Q9UNA0 930 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 TELO2Q9Y4R8 837 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 SBF1O95248 1867 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 USP2O75604 605 aaPredicted RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 HGSNATQ68CP4 663 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 DPY19L2P1Q6NXN4 242 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 PADI6Q6TGC4 694 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 CATSPERGQ6ZRH7 1159 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 FAM178BQ8IXR5 827 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.92■□□□□ 0.14
VRK3-217ENST00000599538 HAUS4Q9H6D7 363 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 ARMCX3Q9UH62 379 aaPredicted RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 AFG3L2Q9Y4W6 797 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 PCDHB13Q9Y5F0 798 aa15.92■□□□□ 0.14
VRK3-217ENST00000599538 DICER1Q9UPY3 1922 aaKnown RBP15.92■□□□□ 0.14
VRK3-217ENST00000599538 CTAGE9A4FU28 777 aa15.91■□□□□ 0.14
VRK3-217ENST00000599538 SLC9A1P19634 815 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms