RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MTMR9Q96QG7 549 aa10.68□□□□□ -0.7
TRIM28-208ENST00000597172 SCAND2PQ9GZW5 306 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-208ENST00000597172 EHMT1Q9H9B1 1298 aa10.68□□□□□ -0.7
TRIM28-208ENST00000597172 LMBRD1Q9NUN5 540 aa10.68□□□□□ -0.7
TRIM28-208ENST00000597172 UBIAD1Q9Y5Z9 338 aa10.68□□□□□ -0.7
TRIM28-208ENST00000597172 VPS13AQ96RL7 3174 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 SYNRGQ9UMZ2 1314 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 ZNFX1Q9P2E3 1918 aaKnown RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 H0Y858 1186 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 MEIS1O00470 390 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 SPTLC2O15270 562 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 PRPF40AO75400 957 aaKnown RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 ZNF865P0CJ78 1059 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 MYCLP12524 364 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 ITGB5P18084 799 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 EDNRBP24530 442 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 MARCKSP29966 332 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 ALDH5A1P51649 535 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 STK38Q15208 465 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 Q4G0T1 1027 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 AXDND1Q5T1B0 1012 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 DGLUCYQ7Z3D6 616 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 SPRED2Q7Z698 418 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 TMEM87AQ8NBN3 555 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 PCSK9Q8NBP7 692 aaKnown RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 HAS1Q92839 578 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 VWCEQ96DN2 955 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 IWS1Q96ST2 819 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 MXRA8Q9BRK3 442 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 TLR9Q9NR96 1032 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 DDX25Q9UHL0 483 aaKnown RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 PCDHA7Q9UN72 937 aa10.67□□□□□ -0.7
TRIM28-208ENST00000597172 MORC2Q9Y6X9 1032 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-208ENST00000597172 COL4A6Q14031 1691 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ZNF236Q9UL36 1845 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 MYADML2A6NDP7 307 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 PPP6R2O75170 966 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 GADD45BO75293 160 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ASGR1P07306 291 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ARP10275 920 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 GCFC2P16383 781 aaKnown RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 CCND2P30279 289 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ZNF76P36508 570 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ATP2C1P98194 919 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 GRIN1Q05586 938 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ORC2Q13416 577 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 CEP55Q53EZ4 464 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 PRR16Q569H4 304 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 XRRA1Q6P2D8 792 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 POTEDQ86YR6 584 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 RNF135Q8IUD6 432 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ETNPPLQ8TBG4 499 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 PHOSPHO2Q8TCD6 241 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 MORC4Q8TE76 937 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 GJA10Q969M2 543 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 CLIC6Q96NY7 704 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 SLC9A7Q96T83 725 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 NAP1L4Q99733 375 aaKnown RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 TINF2Q9BSI4 451 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 NOC4LQ9BVI4 516 aaKnown RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 WDR11Q9BZH6 1224 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 WNT8AQ9H1J5 351 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 KCNMB3Q9NPA1 279 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ADD3Q9UEY8 706 aaKnown RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 FBXO2Q9UK22 296 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 CEP131Q9UPN4 1083 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 DIS3Q9Y2L1 958 aaKnown RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 SRPRBQ9Y5M8 271 aaKnown RBP10.66□□□□□ -0.7
TRIM28-208ENST00000597172 LCTP09848 1927 aa10.66□□□□□ -0.7
TRIM28-208ENST00000597172 ZFYVE26Q68DK2 2539 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 MYH7BA7E2Y1 1941 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 MYH15Q9Y2K3 1946 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 MSH4O15457 936 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 NEMFO60524 1076 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 BMP15O95972 392 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 NFKBIBQ15653 356 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 STXBP2Q15833 593 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 MAMDC4Q6UXC1 1216 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 NIPA1Q7RTP0 329 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 PLA2G4DQ86XP0 818 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 HERC6Q8IVU3 1022 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 ADSSL1Q8N142 457 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 KCNG4Q8TDN1 519 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 INPP4AQ96PE3 977 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-208ENST00000597172 JADE2Q9NQC1 790 aa10.65□□□□□ -0.7
TRIM28-208ENST00000597172 DMXL1Q9Y485 3027 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 KMT2EQ8IZD2 1858 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 LOC102724159A0A0B4J2E5 919 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 LAD1O00515 517 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 EIF3JO75822 258 aaKnown RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 SNAI1O95863 264 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 PFKMP08237 780 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 OR52Z1P0C646 297 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 C6orf222P0C671 652 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 ACTN1P12814 892 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 CST5P28325 142 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 AVPR2P30518 371 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 PRPHP41219 470 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 VCPP55072 806 aaKnown RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 IRX5P78411 483 aaPredicted RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms