RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PPIGQ13427 754 aaKnown RBP eCLIP12.48□□□□□ -0.413e-9■□□□□ 9
LIG1-211ENST00000596457 BANK1Q8NDB2 785 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 AFAP1L1Q8TED9 768 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 LMBR1Q8WVP7 490 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 TNPO1Q92973 898 aaKnown RBP12.48□□□□□ -0.41
LIG1-211ENST00000596457 WNT8BQ93098 351 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 CTAGE1Q96RT6 745 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 WNT8AQ9H1J5 351 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 TMEM60Q9H2L4 133 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 PCDHA12Q9UN75 941 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 RRN3P2A6NIE6 340 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 HBP1O60381 514 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 CTSHP09668 335 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 IQCF3P0C7M6 154 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 CKBP12277 381 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 SLC26A2P50443 739 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 SHHQ15465 462 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 UGCGQ16739 394 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 C9orf50Q5SZB4 431 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 ZNF618Q5T7W0 954 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 RUFY4Q6ZNE9 571 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 FERMT3Q86UX7 667 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 CAGE1Q8TC20 777 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 ATP8B4Q8TF62 1192 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 INTS4Q96HW7 963 aaKnown RBP12.47□□□□□ -0.41
LIG1-211ENST00000596457 FTOQ9C0B1 505 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIG1-211ENST00000596457 FAM49AQ9H0Q0 323 aaPredicted RBP12.47□□□□□ -0.41
LIG1-211ENST00000596457 TTC12Q9H892 705 aaPredicted RBP12.47□□□□□ -0.41
LIG1-211ENST00000596457 NRBP2Q9NSY0 501 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 TUBE1Q9UJT0 475 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 VAV3Q9UKW4 847 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 PCDHB6Q9Y5E3 794 aa12.47□□□□□ -0.41
LIG1-211ENST00000596457 MAFBQ9Y5Q3 323 aaPredicted RBP12.47□□□□□ -0.41
LIG1-211ENST00000596457 TANC1Q9C0D5 1861 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 DDX11L8A8MPP1 907 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 SELPP16109 830 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 PDCP20941 246 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 KLRC1P26715 233 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 TECP42680 631 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 TOB1P50616 345 aaPredicted RBP12.46□□□□□ -0.41
LIG1-211ENST00000596457 PRKCEQ02156 737 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 PPP2R5CQ13362 524 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 ZNF365Q70YC5 407 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 LRRC8DQ7L1W4 858 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 SERINC5Q86VE9 423 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 RDM1Q8NG50 284 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 DNAJB3Q8WWF6 145 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 BBXQ8WY36 941 aaPredicted RBP12.46□□□□□ -0.41
LIG1-211ENST00000596457 DYDC2Q96IM9 177 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.46□□□□□ -0.415e-8■■□□□ 13.4
LIG1-211ENST00000596457 IL23AQ9NPF7 189 aa12.46□□□□□ -0.41
LIG1-211ENST00000596457 SEPT9Q9UHD8 586 aaPredicted RBP12.46□□□□□ -0.41
LIG1-211ENST00000596457 EVPLQ92817 2033 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 IGSF9BQ9UPX0 1349 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 PITPNM1O00562 1244 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 ZNF862O60290 1169 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 FGBP02675 491 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 OATP04181 439 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 OR52Z1P0C646 297 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 SYT1P21579 422 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 HOXC8P31273 242 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 HOXD11P31277 338 aaPredicted RBP12.45□□□□□ -0.42
LIG1-211ENST00000596457 TRAPPC10P48553 1259 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 ADAM17P78536 824 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 CYP4A11Q02928 519 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 TMEM62Q0P6H9 643 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 CTTNQ14247 550 aaKnown RBP12.45□□□□□ -0.42
LIG1-211ENST00000596457 EPHA7Q15375 998 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 TRIM71Q2Q1W2 868 aaKnown RBP12.45□□□□□ -0.42
LIG1-211ENST00000596457 MTERF2Q49AM1 385 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 ZNF484Q5JVG2 852 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 MARCH8Q5T0T0 291 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 FOXD4L5Q5VV16 416 aaPredicted RBP12.45□□□□□ -0.42
LIG1-211ENST00000596457 MTHFD1LQ6UB35 978 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 B3GNT9Q6UX72 402 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 OTOP2Q7RTS6 562 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 RSPH3Q86UC2 560 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 TPH2Q8IWU9 490 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 RPUSD2Q8IZ73 545 aaKnown RBP12.45□□□□□ -0.42
LIG1-211ENST00000596457 FOXD4L4Q8WXT5 416 aaPredicted RBP12.45□□□□□ -0.42
LIG1-211ENST00000596457 FAM167AQ96KS9 214 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 MTMR9Q96QG7 549 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 SH2D3AQ9BRG2 576 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 RGL1Q9NZL6 768 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 TTC28Q96AY4 2481 aa12.45□□□□□ -0.42
LIG1-211ENST00000596457 TMEM150BA6NC51 233 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 POTEMA6NI47 508 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 ZBBXA8MT70 800 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 RSPH10B2B2RC85 870 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 P4HBP07237 508 aaKnown RBP12.44□□□□□ -0.42
LIG1-211ENST00000596457 RSPH10BP0C881 870 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 PSMC5P62195 406 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 SMAD3P84022 425 aaKnown RBP12.44□□□□□ -0.42
LIG1-211ENST00000596457 PTGDRQ13258 359 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 TMEM266Q2M3C6 531 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 RILPL1Q5EBL4 403 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 TMEM240Q5SV17 173 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 C16orf59Q7L2K0 433 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 METTL13Q8N6R0 699 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 RNPC3Q96LT9 517 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms