RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRIM17Q9Y577 477 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 GOLGA6L10A0A0M3HER8 536 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 PVALEFA0A1B0GWK0 134 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 FAM205CA6NFA0 338 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 ZNF233A6NK53 670 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 NFIBO00712 420 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 SOCS7O14512 581 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 DGAT1O75907 488 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 YWHABP31946 246 aaKnown RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 SFR1Q86XK3 245 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 RDM1Q8NG50 284 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 SYTL5Q8TDW5 730 aaPredicted RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 UBXN4Q92575 508 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 SELENOOQ9BVL4 669 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 MOV10L1Q9BXT6 1211 aaKnown RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 CICQ96RK0 1608 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 SPDYE5A6NIY4 337 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 PPP4R3CPQ6ZMV5 832 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 CATSPERGQ6ZRH7 1159 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 DNERQ8NFT8 737 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 CLMNQ96JQ2 1002 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 CNOT6LQ96LI5 555 aaKnown RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 BAG1Q99933 345 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 LBHD1Q9BQE6 289 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 FDPSP14324 419 aaKnown RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 HOOK3Q86VS8 718 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 REM2Q8IYK8 340 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 EEF2KMTQ96G04 330 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 MAN1B1Q9UKM7 699 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 PP2D1A8MPX8 630 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 HBP1O60381 514 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 LACTBP83111 547 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 MYL7Q01449 175 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 EXOC3L4Q17RC7 722 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 DCUN1D2Q6PH85 259 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 SMYD4Q8IYR2 804 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.74□□□□□ -0.69
LIG3-216ENST00000593099 KIAA1586Q9HCI6 787 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 ST7Q9NRC1 585 aa10.74□□□□□ -0.69
LIG3-216ENST00000593099 GSTTP1A0A1W2PQM5 241 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 RRN3P2A6NIE6 340 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 SLC16A4O15374 487 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 SLC26A4O43511 780 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 MYO1EQ12965 1108 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 ZNF568Q3ZCX4 644 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 RRAGAQ7L523 313 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 PCSK9Q8NBP7 692 aaKnown RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 CRACR2AQ9BSW2 395 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 TIPINQ9BVW5 301 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 CCSER1Q9C0I3 900 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 RBSNQ9H1K0 784 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 FANCLQ9NW38 375 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 EFNA5P52803 228 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 SP3Q02447 781 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 C16orf45Q96MC5 204 aaPredicted RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 PDCD2LQ9BRP1 358 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 RGPD5Q99666 1765 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 CTDNEP1O95476 244 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 EEF1GP26641 437 aaKnown RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 LRRC63Q05C16 580 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 IER5Q5VY09 327 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 TATDN1Q6P1N9 297 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 CYP26C1Q6V0L0 522 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 GPT2Q8TD30 523 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 MRPL4Q9BYD3 311 aaKnown RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 MIS12Q9H081 205 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 SUCLA2Q9P2R7 463 aaPredicted RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 INPP5FQ9Y2H2 1132 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 RFX1P22670 979 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 SREBF1P36956 1147 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 BPIFB4P59827 614 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 ZNF746Q6NUN9 644 aaPredicted RBP10.73□□□□□ -0.69
LIG3-216ENST00000593099 MOXD1Q6UVY6 613 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 FAM81BQ96LP2 452 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 TUBGCP2Q9BSJ2 902 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 SNX25Q9H3E2 840 aa10.73□□□□□ -0.69
LIG3-216ENST00000593099 DOT1LQ8TEK3 1739 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ADORA2AP29274 412 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ZNF75DP51815 510 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 CCDC50Q8IVM0 306 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 RNF149Q8NC42 400 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ZNF668Q96K58 619 aaPredicted RBP10.72□□□□□ -0.69
LIG3-216ENST00000593099 MYPNQ86TC9 1320 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 NKRFO15226 690 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIG3-216ENST00000593099 AFPP02771 609 aaKnown RBP10.72□□□□□ -0.69
LIG3-216ENST00000593099 MXI1P50539 228 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 PRKCEQ02156 737 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 MXD4Q14582 209 aaPredicted RBP10.72□□□□□ -0.69
LIG3-216ENST00000593099 KIAA0753Q2KHM9 967 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 SPECC1LQ69YQ0 1117 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 ELMSAN1Q6PJG2 1045 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 TMTC1Q8IUR5 882 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 FBXO16Q8IX29 292 aaPredicted RBP10.72□□□□□ -0.69
LIG3-216ENST00000593099 GUCA1BQ9UMX6 200 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIG3-216ENST00000593099 STRCP1A6NGW2 1772 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 SPOPO43791 374 aa10.72□□□□□ -0.69
LIG3-216ENST00000593099 CYP2C9P11712 490 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms