RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 SMARCC2Q8TAQ2 1214 aa10.85□□□□□ -0.67
BRCA1-226ENST00000591534 TNPO1Q92973 898 aaKnown RBP10.85□□□□□ -0.67
BRCA1-226ENST00000591534 MRPL38Q96DV4 380 aaKnown RBP10.85□□□□□ -0.67
BRCA1-226ENST00000591534 RRP36Q96EU6 259 aaKnown RBP10.85□□□□□ -0.67
BRCA1-226ENST00000591534 INPP4AQ96PE3 977 aaPredicted RBP10.85□□□□□ -0.67
BRCA1-226ENST00000591534 MAP3K14Q99558 947 aa10.85□□□□□ -0.67
BRCA1-226ENST00000591534 SENP7Q9BQF6 1050 aa10.85□□□□□ -0.67
BRCA1-226ENST00000591534 RWDD3Q9Y3V2 267 aa10.85□□□□□ -0.67
BRCA1-226ENST00000591534 NRCAMQ92823 1304 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.84□□□□□ -0.67
BRCA1-226ENST00000591534 SPATA31C2B4DYI2 1134 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 SORBS3O60504 671 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 PPP1R11O60927 126 aaPredicted RBP10.84□□□□□ -0.67
BRCA1-226ENST00000591534 ALADP13716 330 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 SMARCA1P28370 1054 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 HOXC8P31273 242 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 SP2Q02086 613 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 TAF2Q6P1X5 1199 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.84□□□□□ -0.672e-8■■■■■ 27.8
BRCA1-226ENST00000591534 CYB5R4Q7L1T6 521 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 CYFIP1Q7L576 1253 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 TOP1MTQ969P6 601 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 RNPEPQ9H4A4 650 aa10.84□□□□□ -0.67
BRCA1-226ENST00000591534 TANC1Q9C0D5 1861 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 H3BNC9 293 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 TREHO43280 583 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 KCNA5P22460 613 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 CTHP32929 405 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 ARHGAP4P98171 946 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 TROAPQ12815 778 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 GPM6BQ13491 265 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 MBTPS1Q14703 1052 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 EPC2Q52LR7 807 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 PCNX4Q63HM2 1172 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 CASC1Q6TDU7 716 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 GJD3Q8N144 294 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 IL31RAQ8NI17 732 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 ZNF516Q92618 1163 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 WNT8BQ93098 351 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 IL17RAQ96F46 866 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 GPR20Q99678 358 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 C17orf80Q9BSJ5 609 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 MTA3Q9BTC8 594 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 LRFN3Q9BTN0 628 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 IFIH1Q9BYX4 1025 aaKnown RBP10.83□□□□□ -0.68
BRCA1-226ENST00000591534 EPHX3Q9H6B9 360 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 EHMT1Q9H9B1 1298 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 SETD4Q9NVD3 440 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 RTEL1Q9NZ71 1219 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 GBF1Q92538 1859 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 FRMPD4Q14CM0 1322 aa10.83□□□□□ -0.68
BRCA1-226ENST00000591534 NCOR1O75376 2440 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 E7EWF7 191 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 PI4K2BG5E9Z4 385 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 PIK3CDO00329 1044 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 MAFGO15525 162 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 DDAH1O94760 285 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 UPP2O95045 317 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 F12P00748 615 aaPredicted RBP10.82□□□□□ -0.68
BRCA1-226ENST00000591534 RB1P06400 928 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 CYP21A2P08686 494 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 CTSHP09668 335 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 CALM1P0DP23 149 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 CALM2P0DP24 149 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 CALM3P0DP25 149 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 CHMLP26374 656 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 MRPS9P82933 396 aaKnown RBP10.82□□□□□ -0.68
BRCA1-226ENST00000591534 PTH1RQ03431 593 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 UTP14CQ5TAP6 766 aaKnown RBP10.82□□□□□ -0.68
BRCA1-226ENST00000591534 PTCRAQ6ISU1 281 aaPredicted RBP10.82□□□□□ -0.68
BRCA1-226ENST00000591534 NFXL1Q6ZNB6 911 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 FAM43BQ6ZT52 329 aaPredicted RBP10.82□□□□□ -0.68
BRCA1-226ENST00000591534 RPAINQ86UA6 219 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 TMEM192Q8IY95 271 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 FIBCD1Q8N539 461 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 MTRQ99707 1265 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 SPZ1Q9BXG8 430 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 ERAP1Q9NZ08 941 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 TAF6LQ9Y6J9 622 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 PRRC2BQ5JSZ5 2229 aaKnown RBP10.82□□□□□ -0.68
BRCA1-226ENST00000591534 SCN5AQ14524 2016 aa10.82□□□□□ -0.68
BRCA1-226ENST00000591534 REV3LO60673 3130 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 CCDC69A6NI79 296 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 CYTH3O43739 400 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 TCTN1Q2MV58 587 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 FAM26DQ5JW98 314 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 EP400NLQ6ZTU2 488 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 SPRED2Q7Z698 418 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 TEX2Q8IWB9 1127 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 FAM178BQ8IXR5 827 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 PIBF1Q8WXW3 757 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 SEPT1Q8WYJ6 367 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 GLG1Q92896 1179 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 GPKOWQ92917 476 aaPredicted RBP eCLIP10.81□□□□□ -0.68
BRCA1-226ENST00000591534 PPP2R3CQ969Q6 453 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 GPRASP2Q96D09 838 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 C11orf84Q9BUA3 381 aaPredicted RBP10.81□□□□□ -0.68
BRCA1-226ENST00000591534 UPF3BQ9BZI7 483 aaKnown RBP10.81□□□□□ -0.68
BRCA1-226ENST00000591534 LMAN2LQ9H0V9 348 aa10.81□□□□□ -0.68
BRCA1-226ENST00000591534 NSUN3Q9H649 340 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms