RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 IGLV3-22A0A075B6J6 115 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 CYP3A7-CYP3A51PA0A087WV96 503 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 LINC01553A4QN01 128 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 PRR33A8MZF0 331 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 HBP1O60381 514 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 GCFC2P16383 781 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 KCNA5P22460 613 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 CYP3A7P24462 503 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 SFNP31947 248 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 SSTR3P32745 418 aaPredicted RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 CCT2P78371 535 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 PPFIA1Q13136 1202 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 ZNF484Q5JVG2 852 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 UTP14CQ5TAP6 766 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 IER5Q5VY09 327 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 JAKMIP3Q5VZ66 844 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 ALYREFQ86V81 257 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 LMBR1Q8WVP7 490 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 SEPT8Q92599 483 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 DHX38Q92620 1227 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 PHKBQ93100 1093 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 FAM167AQ96KS9 214 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 TGS1Q96RS0 853 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 ZNF577Q9BSK1 485 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 UPF3BQ9BZI7 483 aaKnown RBP11.9□□□□□ -0.5
LIG3-212ENST00000590181 CEP131Q9UPN4 1083 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 PCDHA10Q9Y5I2 948 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 ZNF318Q5VUA4 2279 aa11.9□□□□□ -0.5
LIG3-212ENST00000590181 POTEB3A0JP26 581 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 M0QZ92 97 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 TREHO43280 583 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 GJB5O95377 273 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 PSAPP07602 524 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 IL9P15248 144 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 ERVK-21P61565 698 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 CDC42EP1Q00587 391 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 TCTN1Q2MV58 587 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 LEXMQ3ZCV2 418 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 Q4G0T1 1027 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 PLEKHG4Q58EX7 1191 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 FAM117BQ6P1L5 589 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 POTEBQ6S5H4 581 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 ABHD15Q6UXT9 468 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 KRT25Q7Z3Z0 450 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 BLIDQ8IZY5 108 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 GJD3Q8N144 294 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 BBXQ8WY36 941 aaPredicted RBP11.89□□□□□ -0.51
LIG3-212ENST00000590181 ZFP91Q96JP5 570 aaPredicted RBP11.89□□□□□ -0.51
LIG3-212ENST00000590181 RAD9AQ99638 391 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 FTHL17Q9BXU8 183 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 BCAS3Q9H6U6 928 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 BRMS1Q9HCU9 246 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 SETD4Q9NVD3 440 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 TUBE1Q9UJT0 475 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 PCDHA2Q9Y5H9 948 aa11.89□□□□□ -0.51
LIG3-212ENST00000590181 SMIM35A0A1B0GVV1 85 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 FAM86B1E9PN63 330 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 DHX15O43143 795 aaKnown RBP11.88□□□□□ -0.51
LIG3-212ENST00000590181 DKC1O60832 514 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIG3-212ENST00000590181 NBNO60934 754 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 AMHP03971 560 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 FAM86B2P0C5J1 330 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 ARP10275 920 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 JAK3P52333 1124 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 GRIK4Q16099 956 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 CSPP1Q1MSJ5 1256 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 PTCRAQ6ISU1 281 aaPredicted RBP11.88□□□□□ -0.51
LIG3-212ENST00000590181 TRAF7Q6Q0C0 670 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 FAM178BQ8IXR5 827 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 EXOC8Q8IYI6 725 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 FBXO22Q8NEZ5 403 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 CYP2W1Q8TAV3 490 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 FAM20AQ96MK3 541 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 UIMC1Q96RL1 719 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 SUGCTQ9HAC7 445 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 NCOA5Q9HCD5 579 aaKnown RBP11.88□□□□□ -0.51
LIG3-212ENST00000590181 NRBP2Q9NSY0 501 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 TMEM260Q9NX78 707 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 INSL6Q9Y581 213 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 MAFBQ9Y5Q3 323 aaPredicted RBP11.88□□□□□ -0.51
LIG3-212ENST00000590181 KIAA1671Q9BY89 1806 aa11.88□□□□□ -0.51
LIG3-212ENST00000590181 KDM3AQ9Y4C1 1321 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 WDR64B1ANS9 1081 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 BACH1O14867 736 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 TBX3O15119 743 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 MAGEB2O15479 319 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 INSRRP14616 1297 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 SP4Q02446 784 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 ITGB3BPQ13352 177 aaPredicted RBP11.87□□□□□ -0.51
LIG3-212ENST00000590181 GPNMBQ14956 572 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 NONOQ15233 471 aaKnown RBP eCLIP11.87□□□□□ -0.51
LIG3-212ENST00000590181 PRR16Q569H4 304 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 PPP4R3AQ6IN85 833 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 ATP8B4Q8TF62 1192 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 ZSCAN31Q96LW9 406 aaPredicted RBP11.87□□□□□ -0.51
LIG3-212ENST00000590181 SAMD11Q96NU1 681 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 C17orf80Q9BSJ5 609 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 PHF20Q9BVI0 1012 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 ZNF302Q9NR11 478 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 VPS54Q9P1Q0 977 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms