RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 BMP3P12645 472 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 PABPC4Q13310 644 aaKnown RBP eCLIP9.59□□□□□ -0.87
SMAD4-209ENST00000589941 PICALMQ13492 652 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 MRPL58Q14197 206 aaKnown RBP9.59□□□□□ -0.87
SMAD4-209ENST00000589941 LRRC24Q50LG9 513 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 SGO2Q562F6 1265 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 HP1BP3Q5SSJ5 553 aaPredicted RBP9.59□□□□□ -0.87
SMAD4-209ENST00000589941 EDC3Q96F86 508 aaKnown RBP9.59□□□□□ -0.87
SMAD4-209ENST00000589941 CRELD1Q96HD1 420 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 EMILIN2Q9BXX0 1053 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 KRT82Q9NSB4 513 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 TBX21Q9UL17 535 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 SUGT1Q9Y2Z0 365 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 DMXL1Q9Y485 3027 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 TANC1Q9C0D5 1861 aa9.59□□□□□ -0.87
SMAD4-209ENST00000589941 MYO5AQ9Y4I1 1855 aaKnown RBP9.59□□□□□ -0.87
SMAD4-209ENST00000589941 ZFHX2Q9C0A1 2572 aaPredicted RBP9.59□□□□□ -0.87
SMAD4-209ENST00000589941 MYBBP1AQ9BQG0 1328 aaKnown RBP9.58□□□□□ -0.88
SMAD4-209ENST00000589941 A0A1W2PQ45 241 aaPredicted RBP9.58□□□□□ -0.88
SMAD4-209ENST00000589941 A0A1W2PQY0 241 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 GAS2O43903 313 aaKnown RBP9.58□□□□□ -0.88
SMAD4-209ENST00000589941 ENTPD3O75355 529 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 CSF2RAP15509 400 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 GRB14Q14449 540 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 CCDC57Q2TAC2 916 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 PRAMEF19Q5SWL8 479 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 CCDC30Q5VVM6 783 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 CDPF1Q6NVV7 123 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 ZNF365Q70YC5 407 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 FAM20CQ8IXL6 584 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 ARRDC4Q8NCT1 418 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 PRSS33Q8NF86 280 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 GPBAR1Q8TDU6 330 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 HERVK_113Q902F9 699 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 IDI2Q9BXS1 227 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 CACNA2D2Q9NY47 1150 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 AP4E1Q9UPM8 1137 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 PCDHGC5Q9Y5F6 944 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 ACTL7BQ9Y614 415 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 SIP14410 1827 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 COL4A6Q14031 1691 aa9.58□□□□□ -0.88
SMAD4-209ENST00000589941 BAHCC1Q9P281 2608 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 WDR87Q6ZQQ6 2873 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 TMPRSS2O15393 492 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 DHX15O43143 795 aaKnown RBP9.57□□□□□ -0.88
SMAD4-209ENST00000589941 HOXC6P09630 235 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 HOXA7P31268 230 aaPredicted RBP9.57□□□□□ -0.88
SMAD4-209ENST00000589941 RAB30Q15771 203 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 WDR78Q5VTH9 848 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 DYMQ7RTS9 669 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 SPRED2Q7Z698 418 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 SLC44A5Q8NCS7 719 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 LINS1Q8NG48 757 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 MYH16Q9H6N6 1097 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 CERS4Q9HA82 394 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 SLC28A3Q9HAS3 691 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 MSRAQ9UJ68 235 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 RAXQ9Y2V3 346 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 TECTAO75443 2155 aa9.57□□□□□ -0.88
SMAD4-209ENST00000589941 GAKO14976 1311 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 MYH1P12882 1939 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 EPG5Q9HCE0 2579 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 RBM47A0AV96 593 aaKnown RBP9.56□□□□□ -0.88
SMAD4-209ENST00000589941 SLC15A5A6NIM6 579 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 SEPT4O43236 478 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 KRT37O76014 449 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 PGK1P00558 417 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 TIMP1P01033 207 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 TTBK2Q6IQ55 1244 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 MFSD5Q6N075 450 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 LLGL2Q6P1M3 1020 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 CCAR1Q8IX12 1150 aaKnown RBP9.56□□□□□ -0.88
SMAD4-209ENST00000589941 DNAAF4Q8WXU2 420 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 CWC22Q9HCG8 908 aaKnown RBP9.56□□□□□ -0.88
SMAD4-209ENST00000589941 IFT57Q9NWB7 429 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 SAMM50Q9Y512 469 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 MROH5Q6ZUA9 1318 aa9.56□□□□□ -0.88
SMAD4-209ENST00000589941 HMX2A2RU54 273 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 CAP2P40123 477 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 ST13P50502 369 aaKnown RBP9.55□□□□□ -0.88
SMAD4-209ENST00000589941 PTPN11Q06124 597 aaPredicted RBP9.55□□□□□ -0.88
SMAD4-209ENST00000589941 PPIGQ13427 754 aaKnown RBP eCLIP9.55□□□□□ -0.88
SMAD4-209ENST00000589941 CAVIN4Q5BKX8 364 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 TRIM42Q8IWZ5 723 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 KLHDC4Q8TBB5 520 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 FBLIM1Q8WUP2 373 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 KAZALD1Q96I82 304 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 OSBPL5Q9H0X9 879 aaPredicted RBP9.55□□□□□ -0.88
SMAD4-209ENST00000589941 KCNF1Q9H3M0 494 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 GSX1Q9H4S2 264 aaPredicted RBP9.55□□□□□ -0.88
SMAD4-209ENST00000589941 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.55□□□□□ -0.88
SMAD4-209ENST00000589941 FAM105AQ9NUU6 356 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 BTBD7Q9P203 1132 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 COG5Q9UP83 839 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 UMODL1Q5DID0 1318 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 ZNF521Q96K83 1311 aa9.55□□□□□ -0.88
SMAD4-209ENST00000589941 F6X3S4 739 aa9.54□□□□□ -0.88
SMAD4-209ENST00000589941 IL9P15248 144 aa9.54□□□□□ -0.88
SMAD4-209ENST00000589941 FGFR2P21802 821 aa9.54□□□□□ -0.88
SMAD4-209ENST00000589941 MAP4P27816 1152 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms